Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g06953 ATGGATAACAGATTCAATAAAAGCCTTTTCCTCATCATCGCATCCCTCTCTTCTCTTCTCCTTCCCTCCAATGCCGTCCCTTTAAGTCGCATCTTTAGCAGCAACAGCATCCCTCTCTCTCCCGCCAGTGCCCCAACCGAATCCCAATCAACAACATTCACAAGATCATTCACAACCATCTCTTCATCTCTAGAATCCAAGCCAACCATCAATATGTTAGGCCTCCTCAATGTAGCTGCCAAAGCTGCCAAACAAATCAGTCCTGAAATCAGGGAATTCTGCACTGGAACAGAAAACCCTGCTCTCTGTGCTGAAACCGTTTCCAAACTCAATGGTGCTTTTGACCCTGTCAAGGCTCTTGTCGCTGAGATTGATGCCACCCTCCAAGAGGCCAAGAATGTGGCTGCTATCATCGCAAGGTCACTCAGTGACCCTAAAACCGCTAAGAATGCCCTTGATGCGCTTGGAATCTGTAAGTCACAGTATGATAATATGTTGGATGCAATAAAGGAGGCAGTGACGTTGGTGGAACAACAGAATACGGTGGATGCTTACTATAAGTTCAGCGCTGTGATATCATACAAATCTGCATGTGAAGATGCTTTTACAGAGTCTCCAGGGGTTGACATGCCCTTCGTTAAGGATTCCATTGCTCTGCATGAGTTGGGTGTGCTGCTCCGGATACAACATGAAGTTGATCTGAAGGGGCTAACTTTCCCACGTGAGAGTTGGGACACCTCAAGGTTGAACCTCCATTTCCCTCCCTCTTCCCAAATTATAGCTCCCAAGCAAGAGCTCAACTATAAGGACTATTGGCGAGTCAAGATTGCTAAGGGTATTACACAATATTGGGCATTTGTGGAAGAGAGGCAGAAAGTCCACTGCCTGAATACTCTTTTCTCTCAGCTGCAAATAAACCAATCCATCATCTTCTGCAATTCGGTGAATCGGGTTGAACTCCTTGCCAAGAAAATCACAGAACTTGGATATTCATGTTTCTATATTCATGCAAAGATGTTGCAAGACCACCGAAATAGAGTTTTTCATGACTTTCGCAATGGTGCCTGCAGGAATCTGGTTTGCACTGATCTTTTCACTACGGGAATAGATATCCAAGCAGTCAATGTTGTTATTAATTTTGATTTTCCCAAGAACTCAGAAACTTATCTGCACAGGGTTTGGCAGTGA 1188 0.447 MDNRFNKSLFLIIASLSSLLLPSNAVPLSRIFSSNSIPLSPASAPTESQSTTFTRSFTTISSSLESKPTINMLGLLNVAAKAAKQISPEIREFCTGTENPALCAETVSKLNGAFDPVKALVAEIDATLQEAKNVAAIIARSLSDPKTAKNALDALGICKSQYDNMLDAIKEAVTLVEQQNTVDAYYKFSAVISYKSACEDAFTESPGVDMPFVKDSIALHELGVLLRIQHEVDLKGLTFPRESWDTSRLNLHFPPSSQIIAPKQELNYKDYWRVKIAKGITQYWAFVEERQKVHCLNTLFSQLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTTGIDIQAVNVVINFDFPKNSETYLHRVWQ. 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g06953 395 CDD SF2_C_DEAD 280 393 - -
Seca7g06953 395 Pfam Helicase conserved C-terminal domain 294 393 IPR001650 -
Seca7g06953 395 Pfam Plant invertase/pectin methylesterase inhibitor 90 222 IPR006501 GO:0004857
Seca7g06953 395 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 277 393 IPR027417 -
Seca7g06953 395 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 88 220 IPR035513 -
Seca7g06953 395 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 279 395 IPR001650 -
Seca7g06953 395 SMART PMEI_2 85 219 IPR006501 GO:0004857
Seca7g06953 395 Gene3D - 275 394 IPR027417 -
Seca7g06953 395 Gene3D Invertase/pectin methylesterase inhibitor family protein 86 228 IPR035513 -
Seca7g06953 395 SMART helicmild6 319 395 IPR001650 -
Seca7g06953 395 NCBIfam pectinesterase inhibitor domain 81 221 IPR006501 GO:0004857
Seca7g06953 395 CDD PMEI-like_2 87 223 - -
Seca7g06953 395 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 275 393 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g06953 Seca-Chr7 172202237 172207874 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g06953 278 395 Eukaryotic Initiation Factors Gene Family AT3G19760 36.975 1.65e-23 99.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g06953 K12614 - ini:109171623 236.884