Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g06952 ATGGTTGATTGTGGTGCATATGATAAAACACTGGAAGCACCTTCAGTTTCTCCAGCTTTGGCAGCTGTTGTTGTTGGTGATCTGCCACTACCACGAAATTTTCATGGGTGGAAGCATTTGCCTTCTCGTGCTGCACCAATTCCCTCACATTTGTCTATACCATTCACCAATAGGAGGAGTGAATTAGAATCTCCAGTTTCTGGGTTTAAAACTATTGCCCCTATGCATTCCATTGCTGATGCAATTCCTTCTGCTATGGCAAACCCACCATTGTCTCCTTATGTTTCCAATTGTTGTACACAAGAAAACATGGTGTTGAAACGAGGCAGTGAGAGTTGCCACTGTGTTTATCCCATAAAACTAGACCTTCTTCTTTTGAATGTCTCTCTTTCTCAAAACCCCAACTGGAGTGTTTTCCTCGATGAATTGGCTACCCAACTTGGGCTGCAGACTACCCAAATTGAGCTGATAAACTTTTATGTACTCGGCTTATCAACACTGAATATATCGATGGATATCACTCCGCATAAAGGGATCAGTTTCTCTGCTGATGAAGCATCTAAAATAAACTCTTCGCTTTTACTGCATAAGGTTCAACTAGACCGTAGATTTGTCGGTGACTACAAAGTTCTCAATATTACCTGGTTTAAACCTCCACCTCCTTCTCAAGCTCCTACTTTTGCCGCATCACCTACAAAATCTCCTCAGAGACAAGCACCGACAACTACATCACCGAGTACTTCGGATAGGGGAAGGCATCCAAATTTGCTTCTTATTCTTGGAATTGTTACTGGAATACTCTTCATTTCCATTGTCTGTGTAGTTATACTTTGTTTATGCATGTTGCGGCCAAAAACAAAAACACCTCCCACAGAAGCTGGCCTGCTACTAACATTCACTCCCTTTCCTACAGAAAAGCCAAGTACAGAAAGTGCAGTTCCAGCTGTTGGGTCTCTTCCCCACCCAACCAGTACACGCTTTATTGCTTATGAGGAACTTAAAGATGCAACAAACAATTTTGAACCAGCAAGTGTACTTGGAGAAGGAGGTTTTGGTAGGGTTTTTAAAGGTGTCTTAAATGATGGAACTGCTGTTGCAATTAAGAGGCTTACTAGTGGAGGGCAACAGGGTGACAAAGAATTTTTGGTTGAGGTTGAGATGCTTAGCCGGTTGCATCATCGAAACCTTGTAAAACTAGTGGGATATTATAGCAATCGTGACTCATCTCAAAATCTACTTTGCTATGAGCTTGTCCCAAATGGAAGTTTGGAGGCCTGGCTTCATGGTCCCTTGGGAATTAATTGCCCTTTGGATTGGGACACCAGAATGAAGATTGCGCTTGATGCTGCAAGAGGACTTGCATACCTGCATGAAGATTCACAACCCTGTGTTATACACAGAGATTTCAAGGCATCCAACATATTGCTTGAGAACAACTTTCATGCTAAAGTTGCAGACTTTGGTCTTGCTAAACAGGCACCTGAAGGCAGAGCCAATTACCTGTCTACTCGTGTCATGGGCACATTTGGGTATGTAGCTCCTGAGTATGCTATGACAGGACACCTACTTGTTAAAAGTGATGTTTATAGCTATGGGGTTGTCTTGCTAGAACTGTTGACCGGAAGGAAACCTGTGGATATGTCACAGCCAACTGGACAAGAGAACCTTGTTACTTGGGCAAGGCCAATTCTTAGAGATAAGGACCGGCTGGAAGAACTTGCTGATCCAAAGCTCGGAGGAAGGTACCCAAAGGAAGATTTTGTCCGTGTTTGCACAATTGCAGCAGCCTGTGTTGCCCCTGAAGCAAGCCAACGACCTACAATGGGTGAAGTGGTACAGTCACTTAAAATGGTGCAACGCATTACAGAACATCATGATCCCACGTTATCCTCATCCAATACACGTCCCAACCTGAGACAATCCTCTACCACTTATGAGTCTGATGGAACATCTTCAATGTTTTCTTCTGGTCCTTACTCTGGTCTAAGTGCCTTTGATTATGACAACCTTTCTAGGACGGCAGTTTTCTCTGAAGATCTTCATGAAGGACGATAG 2055 0.4336 MVDCGAYDKTLEAPSVSPALAAVVVGDLPLPRNFHGWKHLPSRAAPIPSHLSIPFTNRRSELESPVSGFKTIAPMHSIADAIPSAMANPPLSPYVSNCCTQENMVLKRGSESCHCVYPIKLDLLLLNVSLSQNPNWSVFLDELATQLGLQTTQIELINFYVLGLSTLNISMDITPHKGISFSADEASKINSSLLLHKVQLDRRFVGDYKVLNITWFKPPPPSQAPTFAASPTKSPQRQAPTTTSPSTSDRGRHPNLLLILGIVTGILFISIVCVVILCLCMLRPKTKTPPTEAGLLLTFTPFPTEKPSTESAVPAVGSLPHPTSTRFIAYEELKDATNNFEPASVLGEGGFGRVFKGVLNDGTAVAIKRLTSGGQQGDKEFLVEVEMLSRLHHRNLVKLVGYYSNRDSSQNLLCYELVPNGSLEAWLHGPLGINCPLDWDTRMKIALDAARGLAYLHEDSQPCVIHRDFKASNILLENNFHAKVADFGLAKQAPEGRANYLSTRVMGTFGYVAPEYAMTGHLLVKSDVYSYGVVLLELLTGRKPVDMSQPTGQENLVTWARPILRDKDRLEELADPKLGGRYPKEDFVRVCTIAAACVAPEASQRPTMGEVVQSLKMVQRITEHHDPTLSSSNTRPNLRQSSTTYESDGTSSMFSSGPYSGLSAFDYDNLSRTAVFSEDLHEGR. 685
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g06952 684 ProSitePatterns Protein kinases ATP-binding region signature. 346 368 IPR017441 GO:0005524
Seca7g06952 684 ProSitePatterns Serine/Threonine protein kinases active-site signature. 464 476 IPR008271 GO:0004672|GO:0006468
Seca7g06952 684 MobiDBLite consensus disorder prediction 227 250 - -
Seca7g06952 684 ProSiteProfiles Protein kinase domain profile. 340 629 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca7g06952 684 CDD STKc_IRAK 346 616 - -
Seca7g06952 684 Gene3D Transferase(Phosphotransferase) domain 1 418 636 - -
Seca7g06952 684 PANTHER OS01G0750732 PROTEIN 90 633 - -
Seca7g06952 684 Gene3D Phosphorylase Kinase; domain 1 322 417 - -
Seca7g06952 684 MobiDBLite consensus disorder prediction 624 653 - -
Seca7g06952 684 FunFam Receptor-like serine/threonine-protein kinase ALE2 320 417 - -
Seca7g06952 684 MobiDBLite consensus disorder prediction 222 250 - -
Seca7g06952 684 FunFam Receptor-like serine/threonine-protein kinase ALE2 418 635 - -
Seca7g06952 684 Pfam Protein tyrosine and serine/threonine kinase 344 615 IPR001245 GO:0004672|GO:0006468
Seca7g06952 684 SUPERFAMILY Protein kinase-like (PK-like) 316 617 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g06952 Seca-Chr7 172195808 172200632 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g06952 13 684 Receptor kinase-like Gene Family AT4G02010 67.388 0.0 939
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_Extensin Seca7g06952 PK_Tyr_Ser-Thr 2e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g06952 - - gmx:100792818 1114.37