Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g06928 ATGGTTCCGAAAACCCATTTCCATGTCATTCTATTTCTGCTTTCAACGTTATGCATCACTTGCAGTTCCAGCTCTGATTTTGATAAGTGGATATCTTGGAATGTGAAGAATTACCTGCAGGAAAAGACCATTTTGAAAACCAAATGGAACGTGGCTACACCTGGTGCCGCTCTAGATTTGAAGCTGAGGCAGGCTGAAAGTAACAAAGTTAGAATAAGAGTTAGCCAAGACGGTTCTGGTGACTTCAAGACCATTACAGAAGCTCTTAATAGCATTCCACCTCGCAACACTAGGAGAGTCATACTGTTGATTGCACCAGGTATTTATAGGGAGAAAGTCATGGTGCCGAGAACATTGCCTTTCATTACATTCTTAGGGAACGCGACGGATCCACCAACCATCACTGGAAATGATACAGCGTCTGTCACTGGAAGAGATGGGACTCCCATAGGAACGTTCCAGAGTGCAACTGTTGCTGTGGATGCTACCTATTTTATGGCCATCAACATAAAATTTGAGAACACCGCTCCGCACGTGATTGGAAAGGTGGGGGAACAAGCTGTGGCGCTTCGCATCTCAGGAACCAAAGCTGCTTTTTACAATTGCACTTTCTATGGGGCTCAAGACACACTCTATGATCACAAAGGCCTTCACTACTTCAACAATTGCTTTATTCAAGGCTCTGTTGATTTCATATTTGGCTCTGGGAGGTCCCTTTACGAGGTATTCTTTCCTTTCTTTCAAACCCCTTTTTTTATAGTACTAAACATACAAAACTGCTATCTAAATTCCATAACCAAGAAGGTGGCTTCCATCACTGCTCAAAAGCGTACAAATTCGTCATTGGAGAGTGGATTTTCGTTCAAAAACAGCATAGTAACAGGCAGTGGGCAGGTTTATCTTGGAAGAGCATGGGGAGATTATTCCAGAGTTGTATTCTCTTACACCTACATGGACAAGATAGTTCACCCCAGAGGATGGAGTGATTGGGGTGACCAAAAGCGTGACTTGGGTGTATATTATGGAGAATACAAGTGCAGTGGGCCAGGAGCTAACTTGAGTGGAAGAGTGCCATGGGCACGGGTACTTAGCGACGAAGAGGCCAAGCCTTTTATTGGGATTCACTTCATTCAAGGGGACACTTGGCTCATCACCCCCTAA 1161 0.4427 MVPKTHFHVILFLLSTLCITCSSSSDFDKWISWNVKNYLQEKTILKTKWNVATPGAALDLKLRQAESNKVRIRVSQDGSGDFKTITEALNSIPPRNTRRVILLIAPGIYREKVMVPRTLPFITFLGNATDPPTITGNDTASVTGRDGTPIGTFQSATVAVDATYFMAINIKFENTAPHVIGKVGEQAVALRISGTKAAFYNCTFYGAQDTLYDHKGLHYFNNCFIQGSVDFIFGSGRSLYEVFFPFFQTPFFIVLNIQNCYLNSITKKVASITAQKRTNSSLESGFSFKNSIVTGSGQVYLGRAWGDYSRVVFSYTYMDKIVHPRGWSDWGDQKRDLGVYYGEYKCSGPGANLSGRVPWARVLSDEEAKPFIGIHFIQGDTWLITP. 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g06928 386 Pfam Pectinesterase 72 380 IPR000070 GO:0030599|GO:0042545
Seca7g06928 386 SUPERFAMILY Pectin lyase-like 71 383 IPR011050 -
Seca7g06928 386 ProSitePatterns Pectinesterase signature 2. 225 234 IPR033131 -
Seca7g06928 386 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 61 383 - -
Seca7g06928 386 FunFam Pectinesterase 67 385 - -
Seca7g06928 386 Gene3D - 66 385 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g06928 Seca-Chr7 171952381 171956301 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g06928 7 383 Carbohydrate Esterase AT5G47500 41.316 4.58e-90 274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g06928 K01051 - qsu:112011696 560.066