Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g06925 ATGGAGATGATGCAGTGCTCGAAGAGTAGTGTTCACGTGATGACAAGTTTATCAGATTGTGGCTCATTAACACATGGAAATGGAAGTGAAGAAGGGATGGTAATAAGGAAAGGTCCATGGACAGAGGAAGAGGATTCTGTTCTGATCAACTACGTCCACGTCCATGGCGAAGGGCTAAAGCGAACAGGAAAAAGCTGCAGATTAAGATGGTTGAACTACTTGCGTCCTAATGTTCGACGTGGGAACATTACCCTCCAAGAACAGCTCTTGATTCTTGACCTTCATTCCCGCTGGGGCAATCGGTGGTCTAAAATAGCAGAACAATTGCCTGGGAGAACAGACAATGAGATCAAGAACTATTGGAGGACCAGAGTGGTGAAACTGGCAAGGCAACTCAAATGTGATGTTAACAGCAAACAGTTTAGAGACACTTTGCGTTTTGTTTGGATGCCACGCCTTATGGAGAGGATTCAGGCCTCTAGTCCTTCTTCCCATAGCCATGACCAAACCAGCGTCTGTAGAAGTAGAACTACTCAAGCCCATAGTGAATCCTGTGGGGCCAATCCCGTCATGGTGTCAGAGGTTTCATCGTATTCTTCAGGGGTTGATGTTCAAGTTCAACCTCCTTCTCTCTCTGAATCAAGCTTATCTACTTACAATTTAATGGGTGGTAGTAACTGGTCACCAGATAGTGCTGAAATGGGATATTCCACACCCACACCATTGCAATGGAACTGCTCAGACATGCAAGCATTTGAACTAGGCAATGGTTTTGGCACTGCAGACTTGTGGACTGATGAAAACATATGGTTCTTGCAGCAGCAGCTTGCTGATGATTTGTGA 843 0.4531 MEMMQCSKSSVHVMTSLSDCGSLTHGNGSEEGMVIRKGPWTEEEDSVLINYVHVHGEGLKRTGKSCRLRWLNYLRPNVRRGNITLQEQLLILDLHSRWGNRWSKIAEQLPGRTDNEIKNYWRTRVVKLARQLKCDVNSKQFRDTLRFVWMPRLMERIQASSPSSHSHDQTSVCRSRTTQAHSESCGANPVMVSEVSSYSSGVDVQVQPPSLSESSLSTYNLMGGSNWSPDSAEMGYSTPTPLQWNCSDMQAFELGNGFGTADLWTDENIWFLQQQLADDL. 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g06925 280 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 32 74 IPR017930 -
Seca7g06925 280 Gene3D - 84 125 - -
Seca7g06925 280 Pfam Myb-like DNA-binding domain 37 74 IPR001005 -
Seca7g06925 280 Pfam Myb-like DNA-binding domain 80 123 IPR001005 -
Seca7g06925 280 CDD SANT 84 123 IPR001005 -
Seca7g06925 280 ProSiteProfiles Myb-like domain profile. 36 125 IPR001005 -
Seca7g06925 280 MobiDBLite consensus disorder prediction 159 179 - -
Seca7g06925 280 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 35 195 IPR044676 GO:0003700|GO:0006355|GO:0043565
Seca7g06925 280 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 75 129 IPR017930 -
Seca7g06925 280 SMART sant 36 76 IPR001005 -
Seca7g06925 280 SMART sant 79 127 IPR001005 -
Seca7g06925 280 FunFam MYB transcription factor 84 147 - -
Seca7g06925 280 Gene3D - 35 80 - -
Seca7g06925 280 SUPERFAMILY Homeodomain-like 35 121 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g06925 Seca-Chr7 171932864 171933959 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g06925 30 279 MYB Transcription Factor Family AT2G47190 47.232 1.44e-72 222
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Seca7g06925 Myb_DNA-binding 3.2e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g06925 K09422 - gmx:778040 340.887