Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g06924 ATGGATGTTAAGGTTAAGAAAGGTGAGTCTGCAACACGAGCACACATGCAGAACAATGATAACGAGATAGGCATCAGAAAAGGTCCATGGACGTTAGACGAGGACACCATTCTCGTCAATTACATTACCACCCATGGTGAAGGTCACTGGAATTCCGTGGCATGTTGTGCAGGTCTGAGGAGAAGTGGGAAGAGTTGCAGATTAAGGTGGCTAAACTACTTGCGTCCAGATGTTCGGCGTGGAAATATCACACTTGAAGAACAGATATTGATTCTTGAGCTCCATTCTCGGTGGGGAAATAGGTGGTCCAAGATTGCTCAACACCTTCCTGGTAGAACAGACAATGAAATTAAAAACTATTGGAGGACCAGAGTGATAAAACAAGCTAAGCAGCTAAAGTGTGATGTGAACAGCAAACAGTTCAGAGACGCCTTGCGTTACGTGTGGATGCCTCGCTTGCTCGAGAGGGTTCAGCCAGCATCTCAATCTCTCGAGCCTCAGAATCAACTACTGGACCCAAACTTAAGTGCTGCAGCTGGGGTCCTAAACGGTTCTTCAGATTCAGGAACAGAGTGGGTAAAACAGAACCACTCCTCGTCCTGTGTCAGTGGCACTTGCTCAGACTCATCATCATCCGTGGAGTTCCAACTTCCTTCAAATTCGGACCATATTGATTCTTCGGAACAGTTAGGTCCTAAAGGCTCGGATCTATGGCCAAGCCAGATGTTACAACAGGGGAACGGTGGTGACTCGTTAGAGAGTTTGTGGAATGATGAGAGTACTGTATGGTTTTTGCAATTGCAACAGCTTTCTGATGACCTCGAAATAAAAAACAATTTCATTGCGTGA 849 0.4582 MDVKVKKGESATRAHMQNNDNEIGIRKGPWTLDEDTILVNYITTHGEGHWNSVACCAGLRRSGKSCRLRWLNYLRPDVRRGNITLEEQILILELHSRWGNRWSKIAQHLPGRTDNEIKNYWRTRVIKQAKQLKCDVNSKQFRDALRYVWMPRLLERVQPASQSLEPQNQLLDPNLSAAAGVLNGSSDSGTEWVKQNHSSSCVSGTCSDSSSSVEFQLPSNSDHIDSSEQLGPKGSDLWPSQMLQQGNGGDSLESLWNDESTVWFLQLQQLSDDLEIKNNFIA. 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g06924 282 Pfam Myb-like DNA-binding domain 80 123 IPR001005 -
Seca7g06924 282 Pfam Myb-like DNA-binding domain 27 74 IPR001005 -
Seca7g06924 282 ProSiteProfiles Myb-like domain profile. 75 125 IPR001005 -
Seca7g06924 282 Gene3D - 84 125 - -
Seca7g06924 282 CDD SANT 84 123 IPR001005 -
Seca7g06924 282 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 75 129 IPR017930 -
Seca7g06924 282 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 22 74 IPR017930 -
Seca7g06924 282 SMART sant 26 76 IPR001005 -
Seca7g06924 282 SMART sant 79 127 IPR001005 -
Seca7g06924 282 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 24 213 IPR044676 GO:0003700|GO:0006355|GO:0043565
Seca7g06924 282 MobiDBLite consensus disorder prediction 212 228 - -
Seca7g06924 282 FunFam MYB transcription factor 84 147 - -
Seca7g06924 282 SUPERFAMILY Homeodomain-like 24 121 IPR009057 -
Seca7g06924 282 MobiDBLite consensus disorder prediction 212 251 - -
Seca7g06924 282 FunFam Myb transcription factor 27 79 - -
Seca7g06924 282 ProSiteProfiles Myb-like domain profile. 22 74 IPR001005 -
Seca7g06924 282 CDD SANT 29 74 IPR001005 -
Seca7g06924 282 Gene3D - 27 79 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g06924 Seca-Chr7 171908927 171910237 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g06924 10 279 MYB Transcription Factor Family AT2G47190 48.214 1.15e-78 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Seca7g06924 Myb_DNA-binding 1.1e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g06924 K09422 - gmx:778065 322.783