Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g06915 ATGGCATCAGCGGGTCTAGCGCCTGCTTCTGGGTTAAGAGATGTAAAAGCAAGTTCAGTTGCTGCTGTTGATAGGTTGCCTGATGAGATGAATGACATGAAAATTAAGGATGACAAAAACTTGTTAAATAAAATGCAGGAAATGGAACCAACTGTGGTAGATGGAAATGGGACTGAAACAGGACATGTAATTGTCACTACCATTGGTGGTAAAAATGGCCAACCAAAGCAGACAATAAGCTACATGGCTGAGCGTGTTGTTGGGCATGGATCGTTTGGTGTAGTTTTCCAGGCAAAGTGCTTGGAGACAGGTGAAACGGTGGCTATAAAGAAGGTTCTTCAAGACAAGAGGTACAAGAACCGGGAATTGCAAACCATGCGCCTTCTGGACCACCCCAATGTTGTCAGTTTGAAGCATTGTTTCTTTTCAACAACTGAAAAGGATGAACTTTATCTTAACTTGGTACTTGAATATGTTCCTGAGACTGTCCATCGGGTTATCAGACACTACAAGAAAATGAATCAAAGGATGCCATTGATATATGTAAAACTTTATTCTTACCAGATATTGAGAGCACTAGCTTATATTCACAACTGTATTGGAGTGACTCACAGGGACATAAAACCTCAAAATTTATTGGTCAATCCTCACACTCACCAGCTGAAGCTTTGTGACTTTGGGAGTGCAAAAGTCTTGGTCAAGGGCGAACCAAACATATCTTACATCTGTTCTAGGTACTATAGAGCTCCCGAGCTTATATTTGGTGCAACTGAGTACACCACAGCCATTGACATTTGGTCAGCTGGTTGTGTACTTGGAGAACTGTTGCTTGGCCAGCCTCTCTTTCCTGGTGAGAGTGGAGTAGATCAGCTTGTTGAAATTATCAAGGTTTTAGGTACCCCAACAAGGGAAGAAATAAAGTGCATGAATCCTAATTACACAGAGTTCAAATTCCCACAAATCAAAGCCCATCCATGGCACAAGATCTTTAACAAGCGTATGCCATCTGAAGCTGTGGATCTTGTCTCAAGACTACTGCAATACTCTCCAAATCTTCGATGCACAGCTCTGGAGGCCCTGCTCCATCCATTCTTTGATGAACTGCGTGATCCAAATACCCGCTTACCTAATGGGCGCTTCCTTCCTCCACTATTTAATTTCAAAGCCAGTGAGCTTAAGGGAGTGCCTGCTGAAATGCTGGTGAAACTGATTCCATCTCATGCAAGAAAGCAGTGTGCCTTGTTTGGGTCATAG 1254 0.4282 MASAGLAPASGLRDVKASSVAAVDRLPDEMNDMKIKDDKNLLNKMQEMEPTVVDGNGTETGHVIVTTIGGKNGQPKQTISYMAERVVGHGSFGVVFQAKCLETGETVAIKKVLQDKRYKNRELQTMRLLDHPNVVSLKHCFFSTTEKDELYLNLVLEYVPETVHRVIRHYKKMNQRMPLIYVKLYSYQILRALAYIHNCIGVTHRDIKPQNLLVNPHTHQLKLCDFGSAKVLVKGEPNISYICSRYYRAPELIFGATEYTTAIDIWSAGCVLGELLLGQPLFPGESGVDQLVEIIKVLGTPTREEIKCMNPNYTEFKFPQIKAHPWHKIFNKRMPSEAVDLVSRLLQYSPNLRCTALEALLHPFFDELRDPNTRLPNGRFLPPLFNFKASELKGVPAEMLVKLIPSHARKQCALFGS. 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g06915 417 SMART serkin_6 81 365 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca7g06915 417 PANTHER GLYCOGEN SYNTHASE KINASE-3 ALPHA 45 411 - -
Seca7g06915 417 Gene3D Phosphorylase Kinase; domain 1 65 160 - -
Seca7g06915 417 Gene3D Transferase(Phosphotransferase) domain 1 161 409 - -
Seca7g06915 417 Pfam Protein kinase domain 81 365 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca7g06915 417 ProSiteProfiles Protein kinase domain profile. 81 365 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca7g06915 417 FunFam Glycogen synthase kinase-3 beta 65 160 - -
Seca7g06915 417 ProSitePatterns Serine/Threonine protein kinases active-site signature. 202 214 IPR008271 GO:0004672|GO:0006468
Seca7g06915 417 SUPERFAMILY Protein kinase-like (PK-like) 80 391 IPR011009 -
Seca7g06915 417 ProSitePatterns Protein kinases ATP-binding region signature. 87 111 IPR017441 GO:0005524
Seca7g06915 417 FunFam Shaggy-related protein kinase kappa 161 409 - -
Seca7g06915 417 CDD STKc_GSK3 76 368 IPR039192 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g06915 Seca-Chr7 171813763 171817771 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g06915 85 372 MAP Kinase Gene Family AT4G01370 36.364 4.13e-56 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_GSK Seca7g06915 Pkinase 4.8e-64 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g06915 K00924 - gmx:100788046 778.474