Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g06906 ATGGAAGCTAGATTTGGTGCAGAAGCTTATCATTTTTATGGTGTGGGTGCTTCCTCGGATTTGAGGGTTGTGGGGAAGAGGTCCTCAGAATGGGATTTGAATGATTGGAGATGGGATGGTGATCTGTTCATAGCTAGTCGGGTGAATCCAGTGCCAGCAGATGGTTTGGGAATGGGACAGCAAATTTTCCCACTTGAGCCTGGGATCCCGGCCTCCAACAGCTCTTCTTCCTGCTCTGAGGAAGTAGATCTTCGGAATACCAAGGGGAACAAGGAAGGGGAGAAGAAAAGGAGAGTTATTGTGCTGGAGGATGATGATTTGAATGAGGAAGCAGGTACCCTTAGTTTAAAGCTTGGTGGGCATGCTTCTCCAATGGTGGATAGGGAGATTGCGGGCTGGGATGGTATGAACGGTAAAAAAAGCAGAGTAGCTGGAGGTACTTCAAATCGAGCTGTTTGTCAGGTGGAGGACTGTGGTGCAGATCTGAGCAGGGCTAAGGATTATCACAGGCGTCATAAAGTTTGTGAGATGCACTCCAAAGCTAGTAGGGCGCTTGTGGGCAATGCAATGCAGAGGTTCTGTCAACAATGTAGTAGGTTTCACTTGCTTCAAGAATTTGATGAAGGAAAGAGAAGCTGTAGAAGACGCTTGGCAGGCCACAATAAACGAAGAAGGAAAACAAATAACGAAGCTGTTCCTAATGGAAGTTCGCTAAATGATGATCAAACTAGTAGTTATCTGCTGATAAGTTTATTGAAGATACTTTCGAATATGCATTCTGACAGATCAGATCAGACTACAGATCAGGATCTACTAACTCATCTTCTAAGGAGTCTTGCTAATCAGAATAGTGAACAAGGGGCCAAGAACTTGTCTGACCTTTTGCGGGAACCAGAGAATTTGTTGAGAGCAAGTGGTTCATCTAGGAAGTCAGAGATGGTGTCAACTTTATTCTCCAATGGTTCTCAAGGCTCTCCACCTGTTATAAGACCACATCAAACTGTATCTATGACTAAAATGCAACAGCAAGTGATGCATGCACATGATGCTAGTGCTGCTGATCCACACCTCATGTCTTCTATAAAGCCTAGCATTTCAAACAGTCCTCCATCTTACTCAGAAGCCAGAGACAGTGCTGATAGACAAATCAAGATGAACAACTTTGACTTGAATGATGTATATATTGACTCAGATGATGGCATGGAAGATCTAGAAAGATTGCCCGTCTCTTCAAATCTTGTCACTAGCTCTCTTGATTACCCATGGACACAACAAGATTCTCATCAGTCAAGTCCACCTCAGACAAGTGGAAATTCAGATTCTGCATCTGCCCACTCCCCGTCTAGTTCCAGTGGAGAAGCTCAGAGTCGCACAGATCGAATTGTTTTTAAACTCTTTGGTAAAGAGCCGAATGATTTTCCTCTTATACTTAGAGCACAGATTCTTGATTGGTTATCTCACAGTCCTACTGATATTGAAAGTTACATACGACCTGGTTGTATTGTTTTGACCATTTATCTGCGTCAGGCTGAAGCTATTTGGGAGGAACTTTGCTATGATCTGACGTCCAGTTTGAGTAGGCTGCTGGATGTCTCAGATGATACTTTTTGGAAAACTGGATGGGTTCACATTAGGGTGCAGCATCAAATGGCATTCATTTTCAATGGTCAAGTTGTCATAGATACATCGCTACCTTTCAGAAGTAACAATTATAGCAAGATTTTAACTGTTAGTCCAATTGCTGTACCAACATCAAAGAGAGTTCAATTTAAAGTTAAGGGGGTCAACATGATACGCCCTGCCGCTAGGCTAGTGTGTTATATGACCCTTAAACCTGTCCTCAGGTTAATGTGTGCTTTAGAAGGAAAATATCTGGCCTGTGACGATGCCCATGAGTCAATGGATCAATACCTCAAGGAGTTTGATGGACTTCAGTGCATCCAGTTTGCATGTTCTGTCCCAGGGACGAATGGAAGAGGATTTATTGAGATTGAGGACCAAGGTTTGAGTAGCAGCTTTTTTCCTTTCATAGTTGCGGAGGAAGATGTTTGCTCAGAAATCTGTGTACTTGAGCCTCTACTGGAATTAAGTGAAACAGATCCAGATATTGAAGGGACTGGAAAAATGAAAGCCAAAAGTCAAGCTATGGATTTCATTCATGAAATGGGTTGGCTTCTTCACAGAAGCCAATTGAGGTCTAGGATGGTTCACTTGAACTCAAGTGCAGATCTCTTTCCACTAACACGGTTCAAGTGGCTTATGGAGTTTTCTATGGACCGTGATTGGTGTGCAGTAGTGAAAAAACTGTTGAATCTACTGCTTGATGGAACTGTGAATACAGGGGACCACCCTTCCCTGGATCTTGCACTTTCAGAGATGAGCCTCCTTCACAGAGCTGTAAGGAGAAATAGCAAGCAGTTAGTGGAGCTGCTTTTGACATATGTTCCTGATAATATTTCTGATAAAGACAGGGCTGAAAAGGCACTAGTTAATGAAGAGAATCAGAGCTTCTTGTTTAGACCTGATGCTGTTGGTCCTGCTGGTTTAACGCCACTCCATATAGCCGCTGGGAAAGATGGTTCTGAGGATGTACTGGATGCTTTAACTAATGATCCTTGCAAGGTGGGAATTGAGGCATGGAAGAGCGCTCGTGACAGCACAGGCTCCACACCTGAGGATTATGCACGTTTACGTGGCCATTATACTTACATTCACTTAGTGCAGAAAAAAATTAACAAGAGACAAGGAGCAGCTCATGTGGTGGTTGAGATTCCAAGCAATCTGACAGAGAGCAATACAAACCAGAAGCAAAATGAACCGTCCACGAGCTTTGAGATTGGAAAGGCTGAAGTACCACGTGGCCAAGGGCACTGTAAACTTTGTGATAACAAATTTTCTTGTAGAACTGCAGTAGGCAGGTCTTTGGTATACAGACCTGCGATGCTCTCTATGGTGGCCATAGCAGCAGTCTGTGTCTGTGTGGCCCTTCTGTTTAAAAGCTCACCCGAAGTTCTATACATGTTTAAACCCTTCAGATGGGAATCGTTGGATTTCGGAACAAGTTAA 3066 0.4348 MEARFGAEAYHFYGVGASSDLRVVGKRSSEWDLNDWRWDGDLFIASRVNPVPADGLGMGQQIFPLEPGIPASNSSSSCSEEVDLRNTKGNKEGEKKRRVIVLEDDDLNEEAGTLSLKLGGHASPMVDREIAGWDGMNGKKSRVAGGTSNRAVCQVEDCGADLSRAKDYHRRHKVCEMHSKASRALVGNAMQRFCQQCSRFHLLQEFDEGKRSCRRRLAGHNKRRRKTNNEAVPNGSSLNDDQTSSYLLISLLKILSNMHSDRSDQTTDQDLLTHLLRSLANQNSEQGAKNLSDLLREPENLLRASGSSRKSEMVSTLFSNGSQGSPPVIRPHQTVSMTKMQQQVMHAHDASAADPHLMSSIKPSISNSPPSYSEARDSADRQIKMNNFDLNDVYIDSDDGMEDLERLPVSSNLVTSSLDYPWTQQDSHQSSPPQTSGNSDSASAHSPSSSSGEAQSRTDRIVFKLFGKEPNDFPLILRAQILDWLSHSPTDIESYIRPGCIVLTIYLRQAEAIWEELCYDLTSSLSRLLDVSDDTFWKTGWVHIRVQHQMAFIFNGQVVIDTSLPFRSNNYSKILTVSPIAVPTSKRVQFKVKGVNMIRPAARLVCYMTLKPVLRLMCALEGKYLACDDAHESMDQYLKEFDGLQCIQFACSVPGTNGRGFIEIEDQGLSSSFFPFIVAEEDVCSEICVLEPLLELSETDPDIEGTGKMKAKSQAMDFIHEMGWLLHRSQLRSRMVHLNSSADLFPLTRFKWLMEFSMDRDWCAVVKKLLNLLLDGTVNTGDHPSLDLALSEMSLLHRAVRRNSKQLVELLLTYVPDNISDKDRAEKALVNEENQSFLFRPDAVGPAGLTPLHIAAGKDGSEDVLDALTNDPCKVGIEAWKSARDSTGSTPEDYARLRGHYTYIHLVQKKINKRQGAAHVVVEIPSNLTESNTNQKQNEPSTSFEIGKAEVPRGQGHCKLCDNKFSCRTAVGRSLVYRPAMLSMVAIAAVCVCVALLFKSSPEVLYMFKPFRWESLDFGTS. 1022
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g06906 1021 Gene3D - 758 946 IPR036770 -
Seca7g06906 1021 MobiDBLite consensus disorder prediction 347 378 - -
Seca7g06906 1021 SUPERFAMILY Ankyrin repeat 791 907 IPR036770 -
Seca7g06906 1021 FunFam Squamosa promoter-binding-like protein 14 144 214 - -
Seca7g06906 1021 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 89 908 IPR044817 GO:0003677
Seca7g06906 1021 ProSiteProfiles Zinc finger SBP-type profile. 150 227 IPR004333 GO:0003677
Seca7g06906 1021 MobiDBLite consensus disorder prediction 422 456 - -
Seca7g06906 1021 SUPERFAMILY SBT domain 151 231 IPR036893 GO:0003677|GO:0005634
Seca7g06906 1021 MobiDBLite consensus disorder prediction 217 239 - -
Seca7g06906 1021 Gene3D - 144 214 IPR036893 GO:0003677|GO:0005634
Seca7g06906 1021 Pfam SBP domain 153 226 IPR004333 GO:0003677
Seca7g06906 1021 SMART ANK_2a 791 821 IPR002110 GO:0005515
Seca7g06906 1021 SMART ANK_2a 847 877 IPR002110 GO:0005515
Seca7g06906 1021 MobiDBLite consensus disorder prediction 70 90 - -
Seca7g06906 1021 MobiDBLite consensus disorder prediction 360 375 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g06906 Seca-Chr7 171704978 171713629 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g06906 1 1021 SBP-box Gene Family AT3G60030 53.276 0.0 967
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Seca7g06906 SBP 5.9e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g06906 - - gmx:100809806 1700.26