Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g06900 ATGCCGAAAGGGAAAGTGATTTTCTCTGGTATATCCCTTGTCCTGGTGGTTGGTGTTGCCATTGGTGTTATTGTTGTTGTTACTAAAAATGATGATACTGATCCTGGGGTAGCATCTCAACAAAAATCTGTGAAGGCCATGTGTGAGACAACTGAAGACCCCAAACTTTGTCATGATACACTTAGCACTGTTCCTGCCTCCAATGCCTCTGATCCAAAGGCTTATATAGCAGCAGCAGTGGAAGCAGGGGTCAACATTGTCATCAAGGCCTTCAACATGAGTGACAGGCTCTCAGTAGAGCATGGTGAAAAGAACAACAACACAGGTGGTCTCAAGATGGCTCTTGATGACTGTAAGGACTTAATGGAATTTGCTATGGACAGCATTGAGTCTGCAATTAATTTGGTTCGTGAAAGCAACATACAATCAATTCATGACAGAACCCCTGACTTTAGGAACTGGTTGAGTGCTATTATCTCATACCAACAATCATGCATGGAAGGTTTTGACAAAGAGAAAGATGGTGAAGAACAGGTGAAGGAACAGTTGAATGAGTCAAGTTTGGACACAATGGGGAAGCTCACTGCAATAGTCCTTGACATTGTTACTGATTTGGCTAAAATCCTTCAGAGCTTTAATTTAAAGTTGGATTTAAATCCTGCTTCTCGTCGTCTTCTGGAGGTTGATAGTGAAGGATATCCCACATGGTTCTCAGCTACAGATCGCAGACTCTTAGCTAAGATGAAAGATGGAGAACAAGTAACACCAAATGCTGTGGTTGCCAAAGATGGAAGTGGTCAATTTAAAACCGTTAAGGATGCTATTGCCTCCTATCCAAAGGGCTTCAAAGGCAGATACATTATCTATGTCAAGGCTGGAACCTATGATGAGTACATCACAGTTCCCAAAAAAACAGCTAACCTTCTTATCTATGGTGATGGCCCTACAAAAACCATTATCACTGGTCATAAAAACTATGTTGATGGTGTCAAGACAATGCAAACTGCCACCTTCGCTAACACTGCACCTGGATTCATTGCTAAGTCAATAGCATTTGAGAACACAGCTGGTGCTAGTAAGCATCAAGCAGTGGCATTTAGAAACCAGGGAGATATGTCAGCTATGTTCGATTGTGCTTTTCATGCTTACCAGGACACTCTGTATGTTCATGCGAATCGTCAATTCTACCGCAACTGTGAAATCTCTGGAACCATTGATTTCATCTTCGGTGCATCAGCAACACTGATCCAGAATTCTAAAATCATTGTGAGGAAGCCAGGGGAAAGTCAATTCAACACAGTGACAGCAGATGGTACAAAACAGAAGAACATGGCTACAGGGATTGTGCTCCAGAATTGCGAGATAGTGCCAGAGCAGGCGTTGTTCCCTGATAGGTTTCAAGTGAAATCGTACTTGGGAAGGCCATGGAAGCAATATGCTAGAACAGTGGTTATGGAGTCTAACATTGGTGACTTTATTCAACCAGAAGGGTGGCATGTTTGGGAAGGGGAACAGTTTCTTGACACATTGTACTATGCTGAGTATGCCAACGTTGGACCTGGTGCTGATGTTAAAGGAAGGGTCAAGTGGAAAGGTTACCACCCAAATATCAATAAGGATGAAGCTGCACAATTCACTGCTAGCCAATTCCTCAGAGGTGGACCTTCTGGGAAAGCTGAGGATTGGTTGCAAGCTACTGGTATTCCTTTCAATGCTGGCTTCATCAAGGGTAATTGA 1737 0.4295 MPKGKVIFSGISLVLVVGVAIGVIVVVTKNDDTDPGVASQQKSVKAMCETTEDPKLCHDTLSTVPASNASDPKAYIAAAVEAGVNIVIKAFNMSDRLSVEHGEKNNNTGGLKMALDDCKDLMEFAMDSIESAINLVRESNIQSIHDRTPDFRNWLSAIISYQQSCMEGFDKEKDGEEQVKEQLNESSLDTMGKLTAIVLDIVTDLAKILQSFNLKLDLNPASRRLLEVDSEGYPTWFSATDRRLLAKMKDGEQVTPNAVVAKDGSGQFKTVKDAIASYPKGFKGRYIIYVKAGTYDEYITVPKKTANLLIYGDGPTKTIITGHKNYVDGVKTMQTATFANTAPGFIAKSIAFENTAGASKHQAVAFRNQGDMSAMFDCAFHAYQDTLYVHANRQFYRNCEISGTIDFIFGASATLIQNSKIIVRKPGESQFNTVTADGTKQKNMATGIVLQNCEIVPEQALFPDRFQVKSYLGRPWKQYARTVVMESNIGDFIQPEGWHVWEGEQFLDTLYYAEYANVGPGADVKGRVKWKGYHPNINKDEAAQFTASQFLRGGPSGKAEDWLQATGIPFNAGFIKGN. 579
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g06900 578 Gene3D Invertase/pectin methylesterase inhibitor family protein 40 206 IPR035513 -
Seca7g06900 578 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 42 205 IPR035513 -
Seca7g06900 578 NCBIfam pectinesterase inhibitor domain 27 202 IPR006501 GO:0004857
Seca7g06900 578 FunFam Pectinesterase 40 206 - -
Seca7g06900 578 SUPERFAMILY Pectin lyase-like 255 572 IPR011050 -
Seca7g06900 578 ProSitePatterns Pectinesterase signature 2. 401 410 IPR033131 -
Seca7g06900 578 SMART PMEI_2 39 201 IPR006501 GO:0004857
Seca7g06900 578 Gene3D - 251 574 IPR012334 -
Seca7g06900 578 Pfam Pectinesterase 257 553 IPR000070 GO:0030599|GO:0042545
Seca7g06900 578 FunFam Pectinesterase 251 574 - -
Seca7g06900 578 Pfam Plant invertase/pectin methylesterase inhibitor 43 201 IPR006501 GO:0004857
Seca7g06900 578 PANTHER PECTINESTERASE 19 564 - -
Seca7g06900 578 CDD PMEI-like_3 46 207 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g06900 Seca-Chr7 171643458 171645576 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g06900 3 578 Carbohydrate Esterase AT3G05610 39.071 2.58e-138 415
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g06900 K01051 - gmx:100789650 912.909