Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g06899 ATGGAAAAAAAGGGACTTGCCACTACTGTTTCTCTCATTTTCGTAGTTGGTGTCGCCATAGGCGTTGTTGCTCTTGTCAGCACCAACCAAAACAGTGGCAGTACCGTCGATGAAACGGGCCAAGACAGCAGTGGGACGTTGAGCGCCCACACTAGGGCCGTCCAGGCCGTGTGCCAAGACAGCGATGACGAAAAGTTTTGCGTTGACACTCTCACAAGTGTCAATGCCACAGACCCAAAGGAATACGTTAAAACTGTGGTGAAAAACACCATGGAAGGCGTCATCAAAGCCTTCAACATGAGTGACAAATTCAATTTGCAAGAAATCAAGATCAACACCACTGGTATCAAAATGGCCCTTGATGATTGTAAGGACTTGTTACAATTCGCCATTGAAGAATTACAAGCCTCAAATATTCTAGTTAAGGACAACAACATTCACAGCGTCAGTGATCGTGCCTCAGACCTTAAAAACTGGCTGGGTGCTGTTGTTGCCTACCAACAATCATGCCTTGATGGATTCAACACCGATGCTGAAAAGGAGGTGAAGACACAGTTAAAAACAGATAGTTTGGATTACATGGGGAAGCTTACTGCGTTAGCACTTGATGTTGTGTCTGGGATCTCTAAGATTCTCGATGCCGTTGGCATGAGTTTGAATGTGAAACCTTCCTCTCGTCGCCTTCTTGATGTGGATCAAGATGGATATCCATCTTGGATGTCTGTTGCAGATCGCAGGCTCATGGCTGATATGAAAGAAGGAGGTTCACTCCCACCTAATGCAGTTGTTGCCAAAGATGGCAGCGGCCAATATAAGACTGTTCAGGATGCTATTAACTCATACCCCAAAGGTCACAAAGGCAGATATGTTATCTACATTAAGGCCGGTATCTATCAAGAGTACATTACTGTTGACAAGAAAAAGCCTAATATTTTCATGTATGGTGATGGCCCTGCAAAATCTGTTATCACAGGTAACAGAAATTTCGTGGACGGTTGGAAGACAATGAGATCTGCTACCTTCTCAACCAAGGCTGATGATTTCATTGCCAAGTCAATGGGATTTGAGAACAGTGCTGGAGCACATAAACACCAAGCAGTGGCACTTCATGTGCAAGGTGATCGCTCTGCTTTCTTTGATTGCGCAATAAGTGGTTATCAGGACACGTTGTATGTTCACGCTCACCGTCAATTTTACCGTAACTGTGAAATCTCTGGCACCATAGATTTCATTTTCGGTTACGCAACAACCTTGATCCAGAGCTCGAAGCTAATTGTGAGGAAGCCTGATCCTAATCAGCAAAACATAGTGGTAGCTGATGGGACAGCTGAAAAGAACATGCCAACTGGAGTTGTGATTCAGAATTGTGAGATTGTTCCAGAGGCAACTCTCCAACCAGATAGATTGACGGTGAGGTCGTACTTGGCGAGGCCATGGAAGGCATATTCAAGGGCAATCTTCTTGGAAACTACCATTGGTGATCTCATTCAGCCTGATGGATATCTTCCATGGTCAGGGAATCAGTTCCTTGACACGTGTTATTTTGCTGAGTATGCTAACACTGGAGCTGGTGCTGATGCTCAGAAAAGAGTCAAGTGGGGACGTGGACAGCTTACCAAAGCTGATGCTATGCAATACACTGCTGATCAATGGCTCCAAGCTAACACATGGTTGCCAGCCACTGGCATACCTTTTGATCTTGGCTTCACTAAAGCTTGA 1719 0.4503 MEKKGLATTVSLIFVVGVAIGVVALVSTNQNSGSTVDETGQDSSGTLSAHTRAVQAVCQDSDDEKFCVDTLTSVNATDPKEYVKTVVKNTMEGVIKAFNMSDKFNLQEIKINTTGIKMALDDCKDLLQFAIEELQASNILVKDNNIHSVSDRASDLKNWLGAVVAYQQSCLDGFNTDAEKEVKTQLKTDSLDYMGKLTALALDVVSGISKILDAVGMSLNVKPSSRRLLDVDQDGYPSWMSVADRRLMADMKEGGSLPPNAVVAKDGSGQYKTVQDAINSYPKGHKGRYVIYIKAGIYQEYITVDKKKPNIFMYGDGPAKSVITGNRNFVDGWKTMRSATFSTKADDFIAKSMGFENSAGAHKHQAVALHVQGDRSAFFDCAISGYQDTLYVHAHRQFYRNCEISGTIDFIFGYATTLIQSSKLIVRKPDPNQQNIVVADGTAEKNMPTGVVIQNCEIVPEATLQPDRLTVRSYLARPWKAYSRAIFLETTIGDLIQPDGYLPWSGNQFLDTCYFAEYANTGAGADAQKRVKWGRGQLTKADAMQYTADQWLQANTWLPATGIPFDLGFTKA. 573
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g06899 572 ProSitePatterns Pectinesterase signature 2. 404 413 IPR033131 -
Seca7g06899 572 Gene3D - 255 569 IPR012334 -
Seca7g06899 572 Pfam Pectinesterase 260 554 IPR000070 GO:0030599|GO:0042545
Seca7g06899 572 SUPERFAMILY Pectin lyase-like 258 567 IPR011050 -
Seca7g06899 572 SMART PMEI_2 49 204 IPR006501 GO:0004857
Seca7g06899 572 Pfam Plant invertase/pectin methylesterase inhibitor 53 202 IPR006501 GO:0004857
Seca7g06899 572 CDD PMEI-like_3 56 210 - -
Seca7g06899 572 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 53 205 IPR035513 -
Seca7g06899 572 PANTHER PECTINESTERASE 20 559 - -
Seca7g06899 572 FunFam Pectinesterase 255 569 - -
Seca7g06899 572 NCBIfam pectinesterase inhibitor domain 44 193 IPR006501 GO:0004857
Seca7g06899 572 Gene3D Invertase/pectin methylesterase inhibitor family protein 51 209 IPR035513 -
Seca7g06899 572 FunFam Pectinesterase 50 209 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g06899 Seca-Chr7 171614490 171616978 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g06899 1 569 Carbohydrate Esterase AT2G47030 37.874 1.23e-138 413
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g06899 K01051 - gmx:100820142 868.996