Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g06896 ATGGCAGCCGCCAAGCCAATTGCAGTAGCAGTTTCTCTCATTCTGGTGGTGGGTGTTGTGATCGGTGTTGTTACTGTGCAAAACAAGAGCCCAAAATCCACCAATGAAGGTGGAGAATTGAATACCCACAACAAGGCCGTATCTACCCTCTGCCAAGGCACTGACGACCAGAAACTCTGCCATGATGTCCTCAGCCCCATCAACACCACAGACCCAAAGGATTACGTGGCAGCAGTGGTGAAAACCTCCATGGAAAGCGTTATCAAAGCCTTCAACATGAGCGATAGGCTCACCGTGGAACATGGAGACAACAACCCTGGCATTAAGATGGCACTTGAAGATTGCAAGGACTTATTGCAATCTGCCATTCAGGAACTCCAAGCCTCAGGTGTTTTGGTTCAAGAAAGCAACCTTCAAGATATCAACCAACGCGCAGCTGAACTTAAAAACTGGCTAGGTGCTGTTGTTGCCTACCAACAATCTTGCCTTGATGGGTTTAACACAGACGGTGAGAAGGAGGTTCAAACCAAGTTACAATCAGGTAGCTTGGACAATGTTGGAAAACTCACTGGCTTGGCACTTGATATTGTGTCTGGTATCACTAAGATCCTTAGTGCTGTTGATTTGAATTTGGCTCTAAAACCCGCTTCTCGTCGTCTTCTTGAGGTCGATCATGAGGGTTACCCAACTTGGTTCTCTGCTTCCGATCGTAAACTCTTGGAGATGATCAGCCAAGGAGTAGGAGGAGCAAATTCAGGCCACAGCACTGGTGGAGGAATTATGCCCAATGCAATTGTCGCTAAGGATGGTAGTGGCCAATTCAAAACTATTTTGGATGCTATTAACTCTTACCCCAAAAACCACCAAGGCAGGTTCATTATTTACGTCAAGGCTGGTATCTATGATGAGTACATTCTCGTTGACAAGAAGAAGCCCAACATTCTCTTGTACGGTGATGGCCCTACCAAGACCATTATCACTGGACGCAAAAACTTCCACGAAGGTGTTAAGACCATGAGAACCGCCACCTTCTCCACTGTTGCTGATGATTTCATTGCCAAGTCAATTGCATTTGAGAACACTGCTGGTGCTGAAGGCCACCAAGCAGTTGCACTCCGTGTGCAGGGTGATCGCTCTGCATTCTTTGATTGTGCTCTTCGTGGTTACCAAGACACCTTGTATGCTCATGCTCACCGTCAATATTACCGTAACTGTGAGATCTCTGGAACCATTGACTTCATCTTTGGCTACTCCACCACCTTGATCCAGAACTCCAAGATCCTGTTGAGGAAGCCTGGTCCAAACCAACAGAACATTGTGGTGGCTGATGGAACAGATCAGAAGAGCATGCCTACTGGAATTGTCCTTCAGAACTGTGAGATCATGCCATCTCCTGAACTCATGGCTGACAGGTTGACTGTGAAGTCTTACTTGGCAAGGCCATGGAAGGCATTCTCAAGGGCTGTTTTCATTGAAAATGTGATTGGTGATTTGATTCAGCCAGATGGATACATTCCTTGGAATCCAATTGAACCAAACACACAAAATGCTTACTTCGCTGAGTTTGCCAACACGGGACCTGGTGCCAATGCTCAAGCAAGAGCTAAATGGGGAAAAGGTCTCATTAGCAAGGATGAAGCTGCTAGATTCACTGCCGAGCCTTGGCTCCAAGCTAGCACTTGGTTGCCTGCAACTGGCATTCCTTTTGATGCTACCTTCACCAAGGCTTAA 1731 0.4679 MAAAKPIAVAVSLILVVGVVIGVVTVQNKSPKSTNEGGELNTHNKAVSTLCQGTDDQKLCHDVLSPINTTDPKDYVAAVVKTSMESVIKAFNMSDRLTVEHGDNNPGIKMALEDCKDLLQSAIQELQASGVLVQESNLQDINQRAAELKNWLGAVVAYQQSCLDGFNTDGEKEVQTKLQSGSLDNVGKLTGLALDIVSGITKILSAVDLNLALKPASRRLLEVDHEGYPTWFSASDRKLLEMISQGVGGANSGHSTGGGIMPNAIVAKDGSGQFKTILDAINSYPKNHQGRFIIYVKAGIYDEYILVDKKKPNILLYGDGPTKTIITGRKNFHEGVKTMRTATFSTVADDFIAKSIAFENTAGAEGHQAVALRVQGDRSAFFDCALRGYQDTLYAHAHRQYYRNCEISGTIDFIFGYSTTLIQNSKILLRKPGPNQQNIVVADGTDQKSMPTGIVLQNCEIMPSPELMADRLTVKSYLARPWKAFSRAVFIENVIGDLIQPDGYIPWNPIEPNTQNAYFAEFANTGPGANAQARAKWGKGLISKDEAARFTAEPWLQASTWLPATGIPFDATFTKA. 577
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g06896 576 FunFam Pectinesterase 258 573 - -
Seca7g06896 576 FunFam Pectinesterase 43 201 - -
Seca7g06896 576 NCBIfam pectinesterase inhibitor domain 31 196 IPR006501 GO:0004857
Seca7g06896 576 SUPERFAMILY Pectin lyase-like 263 571 IPR011050 -
Seca7g06896 576 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 44 200 IPR035513 -
Seca7g06896 576 PANTHER PECTINESTERASE 15 563 - -
Seca7g06896 576 Pfam Pectinesterase 263 558 IPR000070 GO:0030599|GO:0042545
Seca7g06896 576 Pfam Plant invertase/pectin methylesterase inhibitor 46 196 IPR006501 GO:0004857
Seca7g06896 576 Gene3D Invertase/pectin methylesterase inhibitor family protein 41 201 IPR035513 -
Seca7g06896 576 Gene3D - 258 573 IPR012334 -
Seca7g06896 576 SMART PMEI_2 42 196 IPR006501 GO:0004857
Seca7g06896 576 ProSitePatterns Pectinesterase signature 2. 407 416 IPR033131 -
Seca7g06896 576 CDD PMEI-like_3 49 202 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g06896 Seca-Chr7 171593661 171595933 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g06896 1 568 Carbohydrate Esterase AT3G62170 40.948 3.42e-139 414
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g06896 K01051 - gmx:100808559 916.761