Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g06884 ATGGGTGTTGAGAATGGTGAAGGGAATAAAAATAAACATGAAGAGGCAACCACATCAAAAGATCTTGCAGAAATCAGCACCAATGGGGAAAAGAAAGAAAAGGGTAGCAAACAAAAAGAAAAACAAGAAACAGTTCCGTTTCACAAACTGTTCTCTTTTGCCGACTCCACTGACATTCTGTTAATGGCTGTTGGAACCATCGGTGCCATTGGAAATGGTTTGGGTTTGCCTCTCATGACATTACTGTTCGGTGAGATGATTGATAGTTTTGGAAGTAACCAACAAAGCACAGATGTAGTTGAACAAGTATCCAAGGTCTCTCTGAAATTTGTATATTTGGCAGTAGGAAGTGGGTTGGCAGCATTTCTCCAGGTGGCTTGCTGGATGGTAACAGGGGAAAGACAAGCTGCAAGAATAAGGGGATTGTATTTGAAAACTATATTAAGACAAGATGTTGCTTTTTTTGATAAAGAAACAAACACAGGAGAGGTGGTAGGGAGAATGTCAGGTGACACAGTTCTCATACAAGATGCCATGGGTGAAAAGGTTGGGAAATTTCTGCAGCTAATAGCAACATTCATTGGGGGCTTCGTGATAGCCTTTGTGAAAGGGTGGCTTCTAACTGTTGTCATGTTGTCCACTCTTCCACTTCTTGTTGTGTCAGGTGCTGCCATGGCCTTCATCATAGGCAGGATGGCTTCCAGAGGTCAAACAGCTTATGCAAAAGCTGCACATGTAGTTGAACAGACAATTGGCTCAATAAGAACTGTTGCTTCCTTTACTGGGGAAAAGCAAGCAGTTTCTAGTTATAGCAAATTTCTTGTGGATGCTTACAAATCAGGAGTTCATGAAGGTTCCATAGCTGGAGTAGGCCTAGGCACAGTTATGTTTGTTATTTTCTGTGGTTATGCTTTGGCTGTATGGTTTGGCGCAAAGATGATAATGGAAAAAGGATATAATGGGGGAATAGTGATTAATGTGATCATTGCTGTGTTAACTGCTTCCATGTCTCTTGGCCAAGCATCTCCTAGCATGAGTGCTTTTGCTGCGGGTCAGGCTGCAGCTTACAAAATGTTTCAAACAATTGAGAGGAAGCCAGAGATAGATGCTTATGATCCAAATGGAAAAATATTAGAGGATATTCAAGGTGAAATAGAGTTAAGGGATGTTTATTTCAGTTATCCAGCCAGACCTGAGGAGCTGATATTCAATGGATTCTCTCTTCATATACCTAGTGGTACAACTGCAGCATTAGTTGGACAAAGTGGAAGTGGAAAGTCTACAGTTATCAGTTTGGTAGAAAGATTCTACGATCCACAGGAAGGTGAAGTTCTTATTGATGGCATTAACTTGAAAGAATTTCAGCTTAGGTGGATCAGAGAAAAAATTGGCCTTGTCAGTCAAGAACCAGTGTTGTTTGCATCTAGCATTAAGGATAACATTGCATATGGAAAGGAAGGAGCAACTATTGAAGAGATAAGATCAGCATCTGAACTTGCAAATGCTGCTAAATTCATTGATAAACTTCCACAGGGATTGGACACAATGGTTGGGGAGCATGGTACTCAGCTATCTGGTGGGCAGAAGCAGCGTATAGCCATTGCAAGAGCAATCCTAAAAGATCCAAGAATTCTACTTCTAGATGAAGCTACAAGTGCACTTGATGCAGAATCAGAAAGGATAGTGCAAGAGGCTCTAGACAGGATCATGGTCAATAGAACTACAGTTGTTGTGGCACATCGTTTGAGCACAGTTAGGAATGCTGACATGATTGCTGTAATTCATAGAGGGAAGATGGTTGAGAAAGGAACACACTCAGAATTACTCAAGGATCCTGAGGGAGCTTACTCTCAACTTATACGCCTACAAGAAGTAAACAAGGAATCAGAAGAAACTGCAGAACATCACAACAAGAGTGAAGTTTCTATAGAATCCTTCAGACAATCAAGTCAAAGGAGGTCACTTCAAAGATCTATTAGCAGGGGATCATCTTTAGGGAATAGTAGCCGCCATTCATTTTCAGTTTCATTTGGTTTACCCACAGGAGTTAATGTCCCTGACCATGAACGTGAAAACTTACAACCCAAGGAACAACCACAAGAGGTTCCATTACGCCGCCTTGCTTCCCTCAACAAGCCAGAGATTCCAGTTCTTCTAATTGGATGTTTAGCTGCCATAGGAAATGGTGTTATACTTCCAATATTTGGTGTTTTGATATCCAGTGTCATCAAAACATTTTATGAACCATTTGATGAGATGAAAAAAGATGCCAGGTTTTGGGCACTAATGTTTATGATCCTTGGTCTTGCATCGTTACTAGTGATTCCAGCTAGAGCATACTTTTTCTCTGTTGCTGGATGCAAGTTAATCCAACGTATTAGGCTAATATGTTTTGAGAAAGTGGTGAACATGGAGGTTGGTTGGTTTGATGAGCCTGAGAACTCAAGTGGTGCTGTTGGTGCAAGGCTTTCAGCAGATGCTGCTTCTGTACGTGCCCTTGTTGGTGATGCACTTGGACTATTAGTCCAAAATCTAGCATCTGCATTGGCAGGTTTGATTATTGCTTTTATAGCAAGTTGGCAGCTGGCGTTGATTATTCTTGTCTTGATTCCCTTGATTGGATTAAATGGTTATGTTCAAATGAAATTCATGAAGGGATTCAGTGCAGATGCAAAGATGATGTATGAGGAAGCTAGCCAAGTTGCTAATGATGCAGTTGGAAGCATAAGAACAGTAGCTTCTTTCTGTGCTGAAGATAAGGTTATGGAACTATACAGGAAGAAATGTGAAGGCCCCATGAAAACAGGGATAAGGCAAGGGTTAATCAGTGGATCAGGATTTGGGATTTCATTTTTCTTACTGTTTTGTGTCTATGCAACTAGTTTCTATGCAGGAGCTAGACTTGTGGATGCTGGCAAGGCATCATTCTCAGATGTTTTCCGGGTTTTCTTTGCTTTAACTATGGCAGCTATTGGAGTTTCTCAATCAAGCTCCTTTGCTCCTGACTCTAGCAAAGCCAAGTCAGCTACTGCTTCCATATTTGGAATAATTGATAAGAAGTCAAAGATAAATCCAAGTGATGAGTCTGGCACCACACTGGATACTGTTAAGGGGGATATTGAACTTCGTCATGTGAGTTTCAAGTATCCATCTAGGCCTGATATACAAATTTTCAGAGACCTCAACTTGGCTATCCATTCTGGCAAGGTAAAGTGGTTGGTTACTATTAAATTTTTGTTGTTTCAGACAGTGGCCCTTGTTGGTGAAAGTGGAAGTGGGAAATCCACAGTGATTGCCTTGTTGCAAAGATTTTATGATCCTGATTCAGGTGAAATCACACTTGATGGGATAGAAATTAGGCAGTTACAACTCAAGTGGTTAAGGCAACAAATGGGTCTTGTAAGCCAAGAGCCAGTGTTATTCAATGACACTATCCGTGCCAATATTGCTTATGGAAAGGGAGGCAATGCAACTGAAGCAGAAATCATAGATGCAGCAGAATTGGCCAATGCACATAGGTTCATTAGTGGCTTACAACAGGGTTATGATACTATAGTGGGAGAGAGGGGAACCCAATTATCTGGTGGACAAAAGCAAAGGGTAGCCATTGCACGTGCTATAATCAAAAGTCCAAAGATATTGCTATTAGACGAGGCCACAAGTGCATTAGACGCTGAGTCAGAGAGGGTTGTGCAAGATGCATTAGACAGAGTTATGGTAAATAGGACCACTGTGGTTGTGGCGCATCGTCTATCTACAATAAAAAATGCTGATGTGATTGCTGTTGTGAAAAATGGAGTTATAGTGGAGAAAGGAAGGCATGAAACTCTCATTAACATAAAGGATGGGTTTTATGCTTCCTTAGTCCAACTTCACACAAGTGCTTCCACAGTATGA 3897 0.4111 MGVENGEGNKNKHEEATTSKDLAEISTNGEKKEKGSKQKEKQETVPFHKLFSFADSTDILLMAVGTIGAIGNGLGLPLMTLLFGEMIDSFGSNQQSTDVVEQVSKVSLKFVYLAVGSGLAAFLQVACWMVTGERQAARIRGLYLKTILRQDVAFFDKETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLIATFIGGFVIAFVKGWLLTVVMLSTLPLLVVSGAAMAFIIGRMASRGQTAYAKAAHVVEQTIGSIRTVASFTGEKQAVSSYSKFLVDAYKSGVHEGSIAGVGLGTVMFVIFCGYALAVWFGAKMIMEKGYNGGIVINVIIAVLTASMSLGQASPSMSAFAAGQAAAYKMFQTIERKPEIDAYDPNGKILEDIQGEIELRDVYFSYPARPEELIFNGFSLHIPSGTTAALVGQSGSGKSTVISLVERFYDPQEGEVLIDGINLKEFQLRWIREKIGLVSQEPVLFASSIKDNIAYGKEGATIEEIRSASELANAAKFIDKLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERIVQEALDRIMVNRTTVVVAHRLSTVRNADMIAVIHRGKMVEKGTHSELLKDPEGAYSQLIRLQEVNKESEETAEHHNKSEVSIESFRQSSQRRSLQRSISRGSSLGNSSRHSFSVSFGLPTGVNVPDHERENLQPKEQPQEVPLRRLASLNKPEIPVLLIGCLAAIGNGVILPIFGVLISSVIKTFYEPFDEMKKDARFWALMFMILGLASLLVIPARAYFFSVAGCKLIQRIRLICFEKVVNMEVGWFDEPENSSGAVGARLSADAASVRALVGDALGLLVQNLASALAGLIIAFIASWQLALIILVLIPLIGLNGYVQMKFMKGFSADAKMMYEEASQVANDAVGSIRTVASFCAEDKVMELYRKKCEGPMKTGIRQGLISGSGFGISFFLLFCVYATSFYAGARLVDAGKASFSDVFRVFFALTMAAIGVSQSSSFAPDSSKAKSATASIFGIIDKKSKINPSDESGTTLDTVKGDIELRHVSFKYPSRPDIQIFRDLNLAIHSGKVKWLVTIKFLLFQTVALVGESGSGKSTVIALLQRFYDPDSGEITLDGIEIRQLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGNATEAEIIDAAELANAHRFISGLQQGYDTIVGERGTQLSGGQKQRVAIARAIIKSPKILLLDEATSALDAESERVVQDALDRVMVNRTTVVVAHRLSTIKNADVIAVVKNGVIVEKGRHETLINIKDGFYASLVQLHTSASTV. 1299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g06884 1298 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 719 1005 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Seca7g06884 1298 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1040 1290 IPR003439 GO:0005524
Seca7g06884 1298 Gene3D - 1030 1297 IPR027417 -
Seca7g06884 1298 CDD ABC_MTABC3_MDL1_MDL2 385 623 - -
Seca7g06884 1298 Pfam ABC transporter 1076 1221 IPR003439 GO:0005524
Seca7g06884 1298 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1030 1291 IPR027417 -
Seca7g06884 1298 Gene3D - 383 636 IPR027417 -
Seca7g06884 1298 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 385 621 IPR003439 GO:0005524
Seca7g06884 1298 ProSitePatterns ABC transporters family signature. 524 538 IPR017871 GO:0005524|GO:0016887
Seca7g06884 1298 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 374 623 IPR027417 -
Seca7g06884 1298 MobiDBLite consensus disorder prediction 626 642 - -
Seca7g06884 1298 MobiDBLite consensus disorder prediction 643 672 - -
Seca7g06884 1298 FunFam ABC transporter B family member 1 698 1006 - -
Seca7g06884 1298 MobiDBLite consensus disorder prediction 626 672 - -
Seca7g06884 1298 SMART AAA_5 1080 1273 IPR003593 GO:0016887
Seca7g06884 1298 SMART AAA_5 412 598 IPR003593 GO:0016887
Seca7g06884 1298 Gene3D ABC transporter type 1, transmembrane domain 108 1014 IPR036640 GO:0005524|GO:0016020
Seca7g06884 1298 Pfam ABC transporter transmembrane region 718 990 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Seca7g06884 1298 Pfam ABC transporter transmembrane region 63 336 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Seca7g06884 1298 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 63 350 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Seca7g06884 1298 MobiDBLite consensus disorder prediction 1 41 - -
Seca7g06884 1298 CDD ABC_6TM_Pgp_ABCB1_D1_like 62 346 - -
Seca7g06884 1298 MobiDBLite consensus disorder prediction 7 41 - -
Seca7g06884 1298 SUPERFAMILY ABC transporter transmembrane region 699 1019 IPR036640 GO:0005524|GO:0016020
Seca7g06884 1298 CDD ABC_MTABC3_MDL1_MDL2 1040 1291 - -
Seca7g06884 1298 CDD ABC_6TM_Pgp_ABCB1_D2_like 708 1023 - -
Seca7g06884 1298 FunFam ABC transporter B family member 9 1007 1029 - -
Seca7g06884 1298 ProSitePatterns ABC transporters family signature. 1193 1207 IPR017871 GO:0005524|GO:0016887
Seca7g06884 1298 SUPERFAMILY ABC transporter transmembrane region 43 369 IPR036640 GO:0005524|GO:0016020
Seca7g06884 1298 Pfam ABC transporter 404 552 IPR003439 GO:0005524
Seca7g06884 1298 PANTHER ABC TRANSPORTER B FAMILY 26 625 IPR039421 -
Seca7g06884 1298 FunFam ABC transporter B family member 9 49 381 - -
Seca7g06884 1298 FunFam ABC transporter B family member 1 1030 1293 - -
Seca7g06884 1298 FunFam ABC transporter B family member 1 375 624 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g06884 Seca-Chr7 171462450 171468978 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g06884 38 1292 Calmodulin-binding Proteins AT2G36910 45.067 0.0 1073
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g06884 K05658 - gmx:100800034 2184.45