Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g06875 ATGGGCAAAGGCAAAGCCTCTAGTTCTTCCTCCTCATCTATCAGCAGCAGCAGAAAGCCTGTTATCTCAACTGCATCCTCTCTTACACAACAAAATACTGAAGACCTTCATACAGATCTTAGGCTTGGACTAAGCATTTCTGCCACTCAACATCTTGGCCCTTCAACTTCAAGGGGGTATTGGCAACCAACATATCTAAGTGGTTCACAAGGTGCTGAAGTGAATGATTGCAGCGATCATAACAGCTTCTTTGTGAAGGTCTACATGGAAGGCATTCCAATTGGAAGAAAACTCAACTTGTTAGCTCATGATGGCTACCAAGAGTTAGTAAAGACCCTTGAACAAATGTTTGACACTACCATTCTCTGGGGAACTGAGATGGATGGAGTGCAATCTGAGAGATGTCATGTGCTAACTTATGAAGATGGAGAAGGAGACTTGATTATGGTTGGGGACGTGCCTTGGGAGTAA 471 0.4374 MGKGKASSSSSSSISSSRKPVISTASSLTQQNTEDLHTDLRLGLSISATQHLGPSTSRGYWQPTYLSGSQGAEVNDCSDHNSFFVKVYMEGIPIGRKLNLLAHDGYQELVKTLEQMFDTTILWGTEMDGVQSERCHVLTYEDGEGDLIMVGDVPWE. 157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g06875 156 Gene3D - 76 156 - -
Seca7g06875 156 Pfam AUX/IAA family 73 156 IPR033389 -
Seca7g06875 156 MobiDBLite consensus disorder prediction 1 30 - -
Seca7g06875 156 ProSiteProfiles PB1 domain profile. 82 156 IPR000270 GO:0005515
Seca7g06875 156 SUPERFAMILY CAD & PB1 domains 78 156 - -
Seca7g06875 156 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 61 155 IPR003311 GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g06875 Seca-Chr7 171370458 171372278 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g06875 86 155 B3 DNA Binding Superfamily AT4G23980 37.143 1.59e-10 56.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Seca7g06875 AUX_IAA 3.3e-21 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g06875 K14484 - gmx:100781660 240.35