Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g06872 ATGGCTGAGAAGATACTTGACTCCACCCGAGCAGTGACAACCAGAAGCTCCTCCTATCTAACTTCCATTTTTGGCAACGGTTCCCTGGATCTGGCAAGGAAAAATGGTCAAATTAATGTGCAAGGAGGTTCATTATCAGGTGTCACACCAAAGACTCACTCGTATTCAATAAACCCTTCCCAAGCAAATTATGAAGATGCCTGCATTGCAAAAAGTGCAAGGTTAAACCCCGGAGGATCAGGACCTCATCATCATTCAGTTATTACAAGGAATAGTTACTTGTGCACATCTTCCACACAGCACTGCCAGTGTTCACCTCCGCTCAAGAAATCAAGAATAATGGATTCAAGCCAAACACCAGCAACAAACTCACTGAATAAACAAGACTTGGGAAAGGTTCATTTCTCCAACACTTTAACACCAAACTGCGTCTCCTTTGTTTCAAGAAGTGAGGAAACACCTCCTGACGAACAGTCTGAAGCTGTTGGTCAATGTGATAACCAAACGTCAAGCTCAGCAGGACTTAAAGCAAAGAGAAAAGTTGATACTAACTATTGTGATGAACAATCTTCTTCCCTATGCTCGCTTGCAGCCTCAAATAACATTGATATTTGTAGCAGCAAACATGACGATAGCGAAAACTCAACATACTTAAGCGATAATGATGAAGAACCAGATGAGAAGCTTGCTCAGGAGAGCACCAGAGTCAAGAGAAGGAGGAATGCAAACAGTCATAGTTTATATGAAAGGAAAAGAAGAGATAAGATCAACAAGAAGATGCGTATGTTGAAAGAGCTCATACCCAATTGCAATAAGATGGACAAGGCTTCAATGCTTGATGATGCCATCGAATATCTCAAGACCCTACAGCTTCAGTTACAGGTAATTAAGTTTATATATAAGCCTTTTCCTTTCATCTCAGGCCTTGTGCTAAACAGTCATTTGGATGTGCTAATTAAGCTTAGTGTTATGATGCAGATTATGTCAATGGGTGCTGGGCTTTGTATGCCTTTTATGATGTTACCTACTGCCACTCATCCTATGATCACCACACCCCAATTACCTCAGTTAATGGGCTTCAGACCAGGCACAGGCATCTCTTTCAGCCTACCTCAGTTCCCTATTGCACCTTTCACTGACAACAGAGTTAGGATGTTTGGTCTCCCTAACCAGGTGCCATCCATGCCGATTTCTCATGTACCGTTCATTCCTATGGTTGGAAATCCTTCTGCACAACCACTTCTGGCGGAAAACCAAGCTTCTTCCCAGTTAACAACTATAATGTCCTCAGTCCCCAACAACTCATATCTCAATGGAATGGCTCAAACTCAACAAAGCAAGCACTGA 1347 0.4232 MAEKILDSTRAVTTRSSSYLTSIFGNGSLDLARKNGQINVQGGSLSGVTPKTHSYSINPSQANYEDACIAKSARLNPGGSGPHHHSVITRNSYLCTSSTQHCQCSPPLKKSRIMDSSQTPATNSLNKQDLGKVHFSNTLTPNCVSFVSRSEETPPDEQSEAVGQCDNQTSSSAGLKAKRKVDTNYCDEQSSSLCSLAASNNIDICSSKHDDSENSTYLSDNDEEPDEKLAQESTRVKRRRNANSHSLYERKRRDKINKKMRMLKELIPNCNKMDKASMLDDAIEYLKTLQLQLQVIKFIYKPFPFISGLVLNSHLDVLIKLSVMMQIMSMGAGLCMPFMMLPTATHPMITTPQLPQLMGFRPGTGISFSLPQFPIAPFTDNRVRMFGLPNQVPSMPISHVPFIPMVGNPSAQPLLAENQASSQLTTIMSSVPNNSYLNGMAQTQQSKH. 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g06872 448 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 240 289 IPR011598 GO:0046983
Seca7g06872 448 PANTHER TRANSCRIPTION FACTOR PIF3 318 438 IPR044273 GO:0003700|GO:0006355
Seca7g06872 448 MobiDBLite consensus disorder prediction 147 180 - -
Seca7g06872 448 Gene3D - 236 297 IPR036638 GO:0046983
Seca7g06872 448 MobiDBLite consensus disorder prediction 160 177 - -
Seca7g06872 448 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 239 299 IPR036638 GO:0046983
Seca7g06872 448 MobiDBLite consensus disorder prediction 209 251 - -
Seca7g06872 448 CDD bHLH_AtPIF_like 240 295 IPR047265 -
Seca7g06872 448 SMART finulus 246 295 IPR011598 GO:0046983
Seca7g06872 448 Pfam Helix-loop-helix DNA-binding domain 243 290 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g06872 Seca-Chr7 171338192 171340822 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g06872 154 373 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G46970 36.797 1.42e-28 114
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca7g06872 HLH 1.2e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g06872 K12126 - gmx:100818543 366.311