Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g06869 ATGGGAAGGCACTCATGCTGTTACAAGCAGAAGCTTCGGAAGGGTCTCTGGTCCCCTGAGGAGGATGAAAAACTTCTCCAGCATATTACTAAGTATGGCCATGGATGTTGGAGTTCTGTTCCTAAACAAGCAGGTTTGCAAAGGTGTGGTAAGAGCTGCAGGCTTAGGTGGATCAATTACTTAAGGCCTGATTTAAAGAGAGGAACATTCTCACAAGAAGAAGAAAATCTCATCATTGAACTTCATGCTGTATTAGGAAATAGATGGTCTCAAATTGCGGCTCAATTGCCTGGAAGGACTGACAATGAAATAAAGAATCTGTGGAACTCTTGCTTGAAGAAAAAACTGAGGCAAAAAGGTATAGACCCTGTCACTCATAAACCACTGTCCCAGGGTGAGAATGGAGAGGACAATGCTAGGAGCCAAGAGAAAGCACCTGAAGTTTCCAATGAATTGAATTTGAACATCCTGAAATCAGAGAGCTCTAAGTCAGATGCAGCTTCCTATGAGCAGAGAACATCTTCAATTTCCCCAAAAACCTATGCACCTGACATAGAAGGTTCTTGCAGCTCCAAGATTTACAGCAAAAGTGAGATAACCAATTGTTGCAGCAAAGACTTGTTCCTAGACAGGTACATGAGCAATCGCCAGGAGAGCTACAACACCAGTTGCCAGCCCTCAGATTTGATAGGGAATTTTCCCCTTCAGATGAGTTATGCAACCACTGATTATCTCCCAATTGATTCAAACTCTAGCCATTGGATCAACCAAACTGGAAATGGAAGGCCTTTTGATATGAACTCTGAATTTCCTTTAAATGCCACTTCCATTCTTACACCCACAACCACCAGCTTGTTTCTTCCTAGTTCTTTTTGCTACAAGCCTTCACTTGCTGTTCCTTCTGACAATATTTCTACAGCCTGTGGATCCCATTACTGGGAAGCCAGTGCCTCCAACAACAGCAATAGCAGCAATAGAAGTAATAGCAGCACAGAGTTGAGAAGTAGCAGCCCCTTAAACATACAGAATGGTATCCTTTCTTCTTGGGGATTGGCAGATTCTAGCAACTCTACAAAAGAGGCCCAAATTCATATGATGGAAAATCATTCAGAACAAGCCAGGTGGGATGAGTACCTTCACAACCCAATCTTAATGCTGGCTTCTGTACAAAATGAAGCTCCTGAATCTTTATGCAATGAGATAAAGCCCACCATGTATTTGGTACCTGATACTTTAGGGGCTATTTTGCCTCATACCAGGCAGCAAGAACAATCCCAAACTTCTAGCATCTTCTCCAAGGACTTCCAGAAGCTCAGAGCAGCCTTTGGACATATATAG 1338 0.4283 MGRHSCCYKQKLRKGLWSPEEDEKLLQHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGTFSQEEENLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKLRQKGIDPVTHKPLSQGENGEDNARSQEKAPEVSNELNLNILKSESSKSDAASYEQRTSSISPKTYAPDIEGSCSSKIYSKSEITNCCSKDLFLDRYMSNRQESYNTSCQPSDLIGNFPLQMSYATTDYLPIDSNSSHWINQTGNGRPFDMNSEFPLNATSILTPTTTSLFLPSSFCYKPSLAVPSDNISTACGSHYWEASASNNSNSSNRSNSSTELRSSSPLNIQNGILSSWGLADSSNSTKEAQIHMMENHSEQARWDEYLHNPILMLASVQNEAPESLCNEIKPTMYLVPDTLGAILPHTRQQEQSQTSSIFSKDFQKLRAAFGHI. 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g06869 445 Gene3D - 11 67 - -
Seca7g06869 445 Gene3D - 69 145 - -
Seca7g06869 445 MobiDBLite consensus disorder prediction 122 149 - -
Seca7g06869 445 CDD SANT 17 61 IPR001005 -
Seca7g06869 445 FunFam Myb transcription factor 11 67 - -
Seca7g06869 445 MobiDBLite consensus disorder prediction 316 337 - -
Seca7g06869 445 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Seca7g06869 445 PANTHER MYB DOMAIN PROTEIN 55 1 356 - -
Seca7g06869 445 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Seca7g06869 445 CDD SANT 69 109 IPR001005 -
Seca7g06869 445 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Seca7g06869 445 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Seca7g06869 445 SMART sant 13 63 IPR001005 -
Seca7g06869 445 SMART sant 66 114 IPR001005 -
Seca7g06869 445 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Seca7g06869 445 FunFam MYB transcription factor 68 140 - -
Seca7g06869 445 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Seca7g06869 445 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g06869 Seca-Chr7 171283815 171286229 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g06869 1 138 MYB Transcription Factor Family AT4G01680 90.580 5.03e-91 274
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Seca7g06869 Myb_DNA-binding 1e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g06869 K09422 - gmx:100815881 679.478