Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g06864 ATGGCATCTTCATTCTCAATGCAGATGGTGCAAAGTCAGAACCTACTTCCTCGTTTTCATCATGTCCAGGGAAATTTTAGCCAAGATGTATCAAAGGTTCATAGGCCACATGTGGTCTGTAGCAGTACCAAATCAAAGCTTGGTTACAGTAAAACATTGACATCAAGCTCTCATTATGCTGTGAGGTTTTCTGTTACACAACAATCTAAAGCAAAACCAAACACATACAGGAGAATGACATGCACTAATGCTACAGAAAATGAGCTGCAAGCCAAAGTGACACACAAATGTTTCTTTGATATAGAAGTTGGGGGTGAACCTCTTGGCAGGATTGTTTTTGGCCTATTTGGAGAGGTTGTTCCTAAAACAGCTGAGAATTTCCGAGCTTTGTGCACAGGCAAGCAAACAAATTTTGCTACAACATTGGAGTTGAATAATCTCTGTGCAGGAGAAAAAGGATACGGTTACAAAGGAAGCTACTTCCATCGCATAATCAAAGATTTCATGTGTCAGGGAGGGGACTTCACTGAAGGAAATGGAACTGGAGGAGTCAGTATCTATGGTTCGTCATTTGAAGATGAGAGTTTTGCTTTGAAGCATGTTGGTCCTGGAGTTTTGAGCATGGCAAATGCTGGTCCAAACACCAATGGTAGTCAATTTTTTATTTGCACTGTAAAGACTCCATGGTTAGACAATCGCCATGTTGTGTTTGGACATGTCATTGATGGAATGGATATTGTGAGGACACTTGAATCACAGGAGACAAGCAAGTTAGATAATAGACCCCGGAAGCCATGCAAAATTGCTAATTCTGGAGAACTGCCTTTAGATGGTTGA 837 0.4098 MASSFSMQMVQSQNLLPRFHHVQGNFSQDVSKVHRPHVVCSSTKSKLGYSKTLTSSSHYAVRFSVTQQSKAKPNTYRRMTCTNATENELQAKVTHKCFFDIEVGGEPLGRIVFGLFGEVVPKTAENFRALCTGKQTNFATTLELNNLCAGEKGYGYKGSYFHRIIKDFMCQGGDFTEGNGTGGVSIYGSSFEDESFALKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDIVRTLESQETSKLDNRPRKPCKIANSGELPLDG. 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g06864 278 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 96 274 - -
Seca7g06864 278 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 156 173 IPR020892 GO:0003755|GO:0006457
Seca7g06864 278 SUPERFAMILY Cyclophilin-like 89 274 IPR029000 -
Seca7g06864 278 CDD cyclophilin_ABH_like 95 272 - -
Seca7g06864 278 MobiDBLite consensus disorder prediction 254 278 - -
Seca7g06864 278 Gene3D - 82 276 IPR029000 -
Seca7g06864 278 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 115 130 IPR002130 GO:0000413|GO:0003755
Seca7g06864 278 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 232 247 IPR002130 GO:0000413|GO:0003755
Seca7g06864 278 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 161 173 IPR002130 GO:0000413|GO:0003755
Seca7g06864 278 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 219 231 IPR002130 GO:0000413|GO:0003755
Seca7g06864 278 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 204 219 IPR002130 GO:0000413|GO:0003755
Seca7g06864 278 FunFam Peptidyl-prolyl cis-trans isomerase 90 274 - -
Seca7g06864 278 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 99 271 IPR002130 GO:0000413|GO:0003755
Seca7g06864 278 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 98 273 IPR002130 GO:0000413|GO:0003755
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g06864 Seca-Chr7 171242022 171245461 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g06864 109 268 U-box Gene Family AT5G67530 40.373 4.92e-26 105
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g06864 K03768 - gmx:100526955 426.402