Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g06853 ATGGCTTCTTCCATTGCAGCCTTTTCTTCCATATACCAAACCTCCTCTCTTAAAAGACCAACTGCTACAACGGCCTCCGTTTCGTTATCCCGCTTCAACAACACCTTTCTCCTCCGAACTCACCCCAACAAACCCACACTCTCTTTTGTTACTTCCGCCATTGCCACTCCCAACTCTTCCCTCCTCACTGAAGAAGCCTTCAAGGGCACTCTTGGTTTCGACGACCAATTTCGCTATGATTATGAGGCCGAGACCCCTGCCACTGTCAATGACAACGAGCTCGACATTTCCAAGCTTGGTTTGCCTTCGCAACTCGTTGATTCACTCCACAAGCGTGGAATCACTAATCTCTTCCCCATTCAGAGAGCTGTGTTACTGCCTGCACTACAAGGTAGAGATATCATTGCTCGGGCAAAGACTGGGACTGGCAAGACATTAGCTTTTGGAATTCCAATTATTAAAAGTCTCAACGATGATGAACGAAGTCCTCAAAGGCGGTCTGGTCGTCTTCCGAAAGTATTGGTCCTTGCACCTACAAGGGAGTTAGCAAAGCAAGTAGAGAAAGAGATAAAAGAATCTGCTCCTTATCTAAATACAGTTTGTGTCTATGGTGGTGTTTCATATGTAACCCAGCAAAATGCACTCTCGCGTGGTGTTGATGTGGTGGTTGGAACACCTGGCAGAATAATTGACCTAATAAATGGGAACACCCTTAAACTGAGTGAAGTTCAGTATTTGGTCCTTGATGAAGCTGATCAGATGCTTGCTGTTGGGTTTGAGGAGGATGTTGAGGTAATTTTAGAAAAGGTCCCATCTCAGCGGCAGACCATGCTTTTTTCTGCAACCATGCCGGGTTGGGTGAAGAAACTGTCAAGAAAATATTTGAACAACCCATTGACAATTGATTTGCAAAAAATGGTTATGATGCTTTTCACTTTTCTTTTTAACAAGGTCGGTGAGAAAGAAGAAAAGCTTGCTGAAGGGATCAAACTTTATGCTATATCAGCCACTGCAACTTCAAAGCGGACAATGCTTTCAGATCTTATAACTGTTTATGCAAAGGGTGGGAAGGCTATCGTTTTCACACAGACAAAAAGGGATGCTGATGAAGTATCATTGTCACTGACAAATAGTATAGCTTCTGAAGCACTGCATGGTGATATCTCTCAGCATCAAAGAGAGAGAACATTGAATGGTTTTCGGCAAGGGAAATTCACAGTGCTTGTTGCCACTGATGTTGCAGCTCGTGGACTTGATATTCCAAATGTTGATTTGGTTATACATTATGAACTTCCCAATGATCCTGAGACTTTTGTTCATCGCTCTGGTCGTACTGGACGTGCAGGAAAAGAGGGTACTGCTGTTCTAATGTACACCAGTAGCCAGAAGAGAACTGTTAGATCCCTTGAGCGTGATGTAGGCTGCAAATTTGAATTTATTAGTCCACCAGCTATGAAAGAAATTTTGGAATCATCTGCTGAGCAAGTTGTTGCTACACTAAGTAGAGTTCATCCTGAGTCTATTGAGGTTTTCACCGCAACTGCACAAAAACTGGTTGAGGAACAGGGAGCAAGTGTTCTTGCAGCTGCACTAGCACAGCTGAGTGGATTCTCTCGACCTCCATCATCCAGGTCTCTTATCAACCATGAACAGGGATGGATTACGTTACAACTGACTCGAGATCCAGATACTTCTAGAAGATCTCTTTCTGTTAGATCAGTCACTGGGTTTCTTTCTGATGTTTATTCTCCAGCTGCTGATGAAGTTGGAAAGATACATTTAATTGCAGATGAAAGGATTCAAGGAGCTGTTTTTGATCTTCCGGAGGACATTGCTAAAGAGTTACTCAATAAGGACATACCACCTGGAAACACTATTTCCAAGATCACCAAGTTACCTCCTTTGCAAGATGATGGACCTCCAAGTGATTACTATGGAAAGTTTTCTGACAGAGATCAAAGTAACCGAAGGCAAAGAGGTTCTAGGGACCAGAGAGGTTCTAAAACCTCATGGGGACGGCACAGGGACCAGGACTCTGGTGATGAGTTTGGTGATACATATGGGAGAGGTGGTAGAAGTTATAGATCTGGCAACAGCAAGTCTCGAGATGACTGGCTAATTGGAGGCAGACGATCAAGCAGAGGCAGCTATGGAGGTGCCTGTTTTAATTGTGGACTATCTGGGCATCGGGCTTCGGAATGTCCCAAAAAACGAGACTTTTTTTAG 2226 0.438 MASSIAAFSSIYQTSSLKRPTATTASVSLSRFNNTFLLRTHPNKPTLSFVTSAIATPNSSLLTEEAFKGTLGFDDQFRYDYEAETPATVNDNELDISKLGLPSQLVDSLHKRGITNLFPIQRAVLLPALQGRDIIARAKTGTGKTLAFGIPIIKSLNDDERSPQRRSGRLPKVLVLAPTRELAKQVEKEIKESAPYLNTVCVYGGVSYVTQQNALSRGVDVVVGTPGRIIDLINGNTLKLSEVQYLVLDEADQMLAVGFEEDVEVILEKVPSQRQTMLFSATMPGWVKKLSRKYLNNPLTIDLQKMVMMLFTFLFNKVGEKEEKLAEGIKLYAISATATSKRTMLSDLITVYAKGGKAIVFTQTKRDADEVSLSLTNSIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLVIHYELPNDPETFVHRSGRTGRAGKEGTAVLMYTSSQKRTVRSLERDVGCKFEFISPPAMKEILESSAEQVVATLSRVHPESIEVFTATAQKLVEEQGASVLAAALAQLSGFSRPPSSRSLINHEQGWITLQLTRDPDTSRRSLSVRSVTGFLSDVYSPAADEVGKIHLIADERIQGAVFDLPEDIAKELLNKDIPPGNTISKITKLPPLQDDGPPSDYYGKFSDRDQSNRRQRGSRDQRGSKTSWGRHRDQDSGDEFGDTYGRGGRSYRSGNSKSRDDWLIGGRRSSRGSYGGACFNCGLSGHRASECPKKRDFF. 742
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g06853 741 Gene3D - 331 534 IPR027417 -
Seca7g06853 741 Pfam DEAD/DEAH box helicase 118 290 IPR011545 GO:0003676|GO:0005524
Seca7g06853 741 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 92 676 - -
Seca7g06853 741 CDD GUCT_Hera 543 623 - -
Seca7g06853 741 FunFam ATP-dependent RNA helicase RhlE 86 304 - -
Seca7g06853 741 SUPERFAMILY Retrovirus zinc finger-like domains 706 739 IPR036875 GO:0003676|GO:0008270
Seca7g06853 741 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 125 301 IPR014001 -
Seca7g06853 741 Gene3D - 95 305 IPR027417 -
Seca7g06853 741 ProSiteProfiles Zinc finger CCHC-type profile. 721 736 IPR001878 GO:0003676|GO:0008270
Seca7g06853 741 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 344 489 IPR001650 -
Seca7g06853 741 SMART c2hcfinal6 720 736 IPR001878 GO:0003676|GO:0008270
Seca7g06853 741 Pfam Helicase conserved C-terminal domain 342 449 IPR001650 -
Seca7g06853 741 Pfam Zinc knuckle 720 736 IPR001878 GO:0003676|GO:0008270
Seca7g06853 741 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 172 470 IPR027417 -
Seca7g06853 741 Pfam GUCT (NUC152) domain 536 636 IPR012562 GO:0003723|GO:0004386|GO:0005524
Seca7g06853 741 Gene3D - 708 739 - -
Seca7g06853 741 CDD SF2_C_DEAD 329 458 - -
Seca7g06853 741 SMART helicmild6 369 449 IPR001650 -
Seca7g06853 741 MobiDBLite consensus disorder prediction 617 709 - -
Seca7g06853 741 CDD DEADc 105 302 - -
Seca7g06853 741 SMART ultradead3 113 316 IPR014001 -
Seca7g06853 741 MobiDBLite consensus disorder prediction 649 685 - -
Seca7g06853 741 FunFam Nucleolar RNA helicase II 337 527 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g06853 Seca-Chr7 171119336 171126052 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g06853 84 471 Eukaryotic Initiation Factors Gene Family AT1G72730 34.673 1.32e-63 216
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g06853 - - pcin:129296705 1053.89