Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g06846 ATGGGTATTAAGGGTTTAACAAAGCTTTTAGCTGACAATGCCCCCAAAGCCATGAAGGAGAATAAATTCGAGAGCTACTTTGGCCGCAAGATCGCCGTTGACGCCAGCATGAGCATTTACCAGTTCCTTATTGTAGTGGGAAGAAGTGGAACTGAAACGCTAACTAATGAAGCCGGTGAAGTTACTAGATATGTTTTTGATGGGAAGCCACCGGATTTGAAGAAACAAGAGCTGGCAAAACGTTACTCGAAGAGAGCTGAGGCTACTGAGGGCTTGTCAGAAGCCATAGAGGCTGACAATAAGGAAGATATTGAAAAGTACAGTAAACGGACAGTGAAGGTGACAAAGCAGCATAATGAAGACTGCAAAAGACTTTTAAGACTCATGGGAGTGCCTGTTGTTGAGGCACCCTCGGAAGCAGAGGCTCAGTGTGCTGCTCTCTGCAAAGCTGGAAAGGCAAGTTCATATCTGTTGTCTTCTGAAGACATGGATTCTTTGACGTTTGGAGCTCCTAAATTTCTTCGCCATCTAATGGATCCTAGCTCGAAAAAAGTTCCAGTGATGGAATTTGATGTTGCAAAGATTTTGGAGGAGTTAAATCTGACCATGGACCAATTTATTGACTTATGCATTCTTTCTGGGTGTGATTATTGTGACAACATTCGAGGGATTGGGGGACAGACAGCTTTGAAGCTCATACGTCAACATGGCTCAATTGAAAATATACTGGAGAACATAAACAGAGAGAGGTACCAGATACCAGATGATTGGCCATATCAGGAGGCTCGGAGGCTTTTTAAAGAACCAATGGTCATAACTGAAGATGAGGAACTTAATCTCAAATGGTCTGGTCCAGATGAAGAAGGGTTAATGACATTTCTGGTAAATGAGAATGGGTTCAACAGTGATAGGGTGACAAAGGCAATAGAAAAAATTAAAGCGGCAAAGAACAAGTCATCACAAGGCCGATTGGAATCATTCTTTAAGCCAGCTGCAAATCCATCTGTACCTATCAAACGGAAGGAAAGCAAATGCATGCTTAGATCTTTCAAACCAGCAATTGAGCATAAGATGTTCTCTCTGCAACTTCCTAACGGGTCAAGGCCCATGGTTTTTGGCAAGTTGAGCTTGCCAATATATAATCTGGGTTCCAAGTTCTCTGTGCCATTGTCTAGAGGTGTCTGCTTTGGTGCCTGA 1197 0.4294 MGIKGLTKLLADNAPKAMKENKFESYFGRKIAVDASMSIYQFLIVVGRSGTETLTNEAGEVTRYVFDGKPPDLKKQELAKRYSKRAEATEGLSEAIEADNKEDIEKYSKRTVKVTKQHNEDCKRLLRLMGVPVVEAPSEAEAQCAALCKAGKASSYLLSSEDMDSLTFGAPKFLRHLMDPSSKKVPVMEFDVAKILEELNLTMDQFIDLCILSGCDYCDNIRGIGGQTALKLIRQHGSIENILENINRERYQIPDDWPYQEARRLFKEPMVITEDEELNLKWSGPDEEGLMTFLVNENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPAANPSVPIKRKESKCMLRSFKPAIEHKMFSLQLPNGSRPMVFGKLSLPIYNLGSKFSVPLSRGVCFGA. 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g06846 398 Hamap Flap endonuclease 1 [fen]. 1 329 IPR023426 GO:0016788
Seca7g06846 398 FunFam Flap endonuclease 1 201 268 - -
Seca7g06846 398 PANTHER FLAP ENDONUCLEASE FAMILY MEMBER 1 349 IPR006084 -
Seca7g06846 398 ProSitePatterns XPG protein signature 2. 130 144 IPR019974 GO:0016788
Seca7g06846 398 FunFam Flap endonuclease 1 63 203 - -
Seca7g06846 398 SUPERFAMILY PIN domain-like 2 216 IPR029060 -
Seca7g06846 398 SMART xpgineu 127 201 IPR006086 GO:0004518
Seca7g06846 398 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 201 335 IPR036279 -
Seca7g06846 398 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 126 143 IPR006084 -
Seca7g06846 398 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 149 169 IPR006084 -
Seca7g06846 398 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 28 42 IPR006084 -
Seca7g06846 398 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 206 221 IPR006084 -
Seca7g06846 398 Gene3D - 205 268 - -
Seca7g06846 398 CDD PIN_FEN1 4 314 - -
Seca7g06846 398 SMART xpgn3 1 88 IPR006085 GO:0004518
Seca7g06846 398 SMART HhH_4 203 236 IPR008918 GO:0003677|GO:0003824
Seca7g06846 398 Gene3D - 10 204 - -
Seca7g06846 398 Pfam XPG I-region 130 216 IPR006086 GO:0004518
Seca7g06846 398 CDD H3TH_FEN1-Euk 204 272 - -
Seca7g06846 398 Pfam XPG N-terminal domain 1 88 IPR006085 GO:0004518
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g06846 Seca-Chr7 171042903 171049053 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g06846 1 362 Core DNA Replication Machinery Family AT5G26680 78.796 0.0 619
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g06846 K04799 - cave:132187694 646.736