Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g06843 ATGGGAAGACACTCTTGCTGCTATAAGCAGAAGTTAAGAAAAGGCCTCTGGTCTCCAGAGGAAGATGAGAAGCTTTTGAATTATATCACCAAACATGGTCATGGATGTTGGAGCTCTGTCCCAAAACTAGCTGGCTTGCAGAGGTGTGGGAAGAGCTGCAGGTTAAGGTGGATAAATTACCTGAGACCTGATTTGAAGAGAGGAGCATTCTCTCAGCAAGAAGAGAATTTGATCATTGAACTCCATGCAGTCCTTGGTAACAGGTATATGTTTTTTATGTGCTTGCTTTTGATCAGGTGGTCTCAGATTGCAGCACAGTTACCAGGAAGAACTGACAATGAGATTAAGAATCTATGGAATTCCTGTCTCAAGAAGAAGCTGAGGCAAAGAGGCATTGACCCAAACACCCACAAACCACTCTCTGAGATTGAGAATGACATTAAGGAAAAGCCACCCATAGCTGACAAAAGCAATCAGAAAGCCTCAGTTGGATCCAATGAAGTGATGAGTTTGGTTGAGGCAGCAAATCCCAAACCAACTTCCATGCCTGCAGAGAGATACCCACTAGAAGTTTCTACTACCTCCAAGATCAACAACAGCAACAGTAGTAGCAGTAATTTGACCAGCACAACACCACCTACCCAGGAATTATTCCTAGATAGGTATGGTACCTGCCATGATAGTTCCATCACCACCAGTTGCAGACCATCTGATATGGCAGGATACTTTTCTTTCCAGCACTTGAACTATGGATCAAACATGGGACTCTCTCCAAATCCCAACACCTCTCTTTGTTTCATACCAAACACCACTTCTTCCCAAGTTATGTCAGACCTCAATTCTACCATAACCTCTACCATGCTCCATTCTGTGTCAAGCTCAATTTTCCCAACTCCAACACATGTAAAGTCCACCATTAGTACTCTCCAGTCTAATAACAATCCTTCTTCCATATCCTCTGATGGGGTTCACAACTGGGAAGCAAATAACTTCAGTAACAAAAGCAATGGGAACAGTAACAATATCCAGTTACAAAACAACACAAACTTCTTTGACAACAGCACTCTAACATGGGGGCTGGCAGAGTCTGTGAAGGTTAATAATAAAGACTCTCATCATGTACCCTTACAAACAGAACAAGAAGACATAAAATGGTCTGAATATCTCAACACCCCATTTCTTCTGGGAAACACAGTGCAGAATCAAACCTCTCAATCCATCTACAGTGAGGTTAAACCAGAAACAAGCTTCATAACAGATGAGTCATGTACTAGTTGGCACCATAGCCAACAGCACCAACCAGCTTTTCAACTTTCAGATATATATACCAAGGATCTGCAGAGATTTTCAGTGGCTTTTGGACAAACCCTGTAA 1374 0.4229 MGRHSCCYKQKLRKGLWSPEEDEKLLNYITKHGHGCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGAFSQQEENLIIELHAVLGNRYMFFMCLLLIRWSQIAAQLPGRTDNEIKNLWNSCLKKKLRQRGIDPNTHKPLSEIENDIKEKPPIADKSNQKASVGSNEVMSLVEAANPKPTSMPAERYPLEVSTTSKINNSNSSSSNLTSTTPPTQELFLDRYGTCHDSSITTSCRPSDMAGYFSFQHLNYGSNMGLSPNPNTSLCFIPNTTSSQVMSDLNSTITSTMLHSVSSSIFPTPTHVKSTISTLQSNNNPSSISSDGVHNWEANNFSNKSNGNSNNIQLQNNTNFFDNSTLTWGLAESVKVNNKDSHHVPLQTEQEDIKWSEYLNTPFLLGNTVQNQTSQSIYSEVKPETSFITDESCTSWHHSQQHQPAFQLSDIYTKDLQRFSVAFGQTL. 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g06843 457 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Seca7g06843 457 SMART sant 66 125 IPR001005 -
Seca7g06843 457 SMART sant 13 63 IPR001005 -
Seca7g06843 457 FunFam MYB transcription factor 68 140 - -
Seca7g06843 457 ProSiteProfiles Myb-like domain profile. 62 123 IPR001005 -
Seca7g06843 457 CDD SANT 69 120 IPR001005 -
Seca7g06843 457 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Seca7g06843 457 Pfam Myb-like DNA-binding domain 67 122 IPR001005 -
Seca7g06843 457 FunFam Myb transcription factor 11 67 - -
Seca7g06843 457 CDD SANT 17 61 IPR001005 -
Seca7g06843 457 Gene3D - 11 65 - -
Seca7g06843 457 PANTHER MYB DOMAIN PROTEIN 55 1 362 - -
Seca7g06843 457 Gene3D - 66 129 - -
Seca7g06843 457 SUPERFAMILY Homeodomain-like 12 119 IPR009057 -
Seca7g06843 457 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 127 IPR017930 -
Seca7g06843 457 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g06843 Seca-Chr7 170975750 170977707 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g06843 1 457 MYB Transcription Factor Family AT1G09540 47.930 2.98e-118 348
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Seca7g06843 Myb_DNA-binding 9.5e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g06843 K09422 - qsu:112017656 580.867