Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g06840 ATGCCTCTGTACGAGTTATACCGGTTGGCTAGAGAGAAGCTTGGAAAAGAGATTAACAACACACATGCAGCTGATCAACCTTCCTCGCCTGAGAATGATTTTTTGGAGCTGGTTTGGGAGGGTGGTCAGATTTCAAGTCAGGGTCAGTCTAGTAGAGTTAGAAAGAGTCCATCTTGCAGGAGTTTGCCATCTCACTGCTTGCCATCTCACAGTCCTAAAGGTAGAGATAAAGATGTAGGGTATGGTAACAATACAAGGATGGGAAAGTTTGGGGATTTAGATTCTGGATTGAATGAGATTCCAATGTCAGTGCCATCCCGAGAAGTGGATTTGAGTCAAGATGAAGATGTGATACCTTGGTTGGATTATACAATGGATGGCTCTTTGCAACATGAATATAGTTCTGATTTCCTACATGAACTATCTGGGGTCACGGAGAATGACCTCCCTGTCTCAAATAGTTTTACTCTATTGGATAAAAGAAGTAATGGCAACCAGGTATTTAGGGACTGTCATAAAAATTCTGCAGAACCAGGGAATGTTTCCAAGGGTTCTTCAGCTGAACAGGTTGAGACTGCTAGACCTAAAGCTAGCACCAGTCAGTTATACCCGCCATCATCACATCAATGTCAAGAATCATATGTATCTGTTAGATCCAGGACATCAGATATAACTGAAAATAATAATGCAAGTAATGTAAACCATGATGTGCCTTATGGTGAAATTACTCAGATTCCATCTTCCTCAAGTGATTTGTCTAGCTTAAAGGTGCAGAAGCAAGATCCTATGATGCCTAGCAATGGTTCTGCTGTAATGAATTTCTCCCATTTTGCAAGGCCTGCTGCTCTTGTGAGGGCTAATCTTCAGAACATTGGCTTGAAGTCTGGTTTGTCTTCAGCAAGATCAGACAATATGGGAATTAAGAATAAAGGTGTTGCTTCAACTAGCAGCAATCCTCCTGAGTCAACTCTTGTTGATTCAAGTGGTGAATGTCCAAAGGAACCAACCATGCACTGCCAGCAGGTTGCGGAGCAATCCAAGGCTGATTTGAAACCTTTGCAGCCAAAATCTCTTGAACAGAATGCTAAAGCTTCTAAACAGTTGGAGCCTGCTTGCAAAGAGAGTGCTATTAAGATTGATCAGACTTCTAATCTAGCTCTTGGTGACAGTAGAGCTAAAGGACACACAGCTGCTGAGAAAAATACTGAGCCAGCAGTAGCCTCTTCCTCTGTTTGCTCTGGCAATGGTGCAGATAGAGGTTCAGATGATCCAAATCAAAATTTGAAGCGAAAAAGTAGAGACACTGAGGACTCTGAGTGCCACAGTGAAGATGTTGAGGAAGAATCTGTTGGTGCTAAAAAGGCAGCTTCTGGACGAGGTACAGGTTCCAAGAGAAGCCGTGCAGCTGAAGTGCATAATTTATCTGAAAGAAGGCGAAGAGACAGAATCAATGAGAAGATGCGTGCATTGCAAGAACTCATACCGAATTGCAATAAGGTGGATAAAGCTTCTATGCTGGATGAGGCAATTGAGTATCTTAAAACACTTCAGCTCCAAGTTCAAATTATGTCAATGGGAGCTGGTTTATATATGCCTCCAATGATGTTACCTGCAGGAATGCAGCACATGCATGCAGCACACATGGCTCCATTTTCACCTATGGGTGTTGGCATGCACATGGGGTTGGGTATGGGTTATGGGATGGGAATGCCTGACATGAGTGGTGGATCTTCTAGATTCCCCACAATGATTCAGGTGCCCCAAATGCAAGGAACTCATATCCCTGTTGCACATATGTCTGGTCCCACTGCTTTACATGGGGTGGCCAGACCAAGTCCTGGAGGGTTTGGGCTTCCTGGTCAGGGACTTCCCATGCCAATGCCTCGTGCTCCTGTATTTCCTTTTTCAGGAGGGCCTCTTATGAACTCATCACCTCTGGGACTACATGCCTCTGGATCAGCAGGACCTGTTGAAACTGTGGATTCAGCTTCAGCATCTGGCTTAAAGGATCCAATGCCAAATATGGATTCACAAGTTAAGCAAAGCACTGGTGGCTGTGACTCAACAAGTCAGATGCCTACCCAGTGCGAAGCAGCAACTGTTGGATTTGAACAGTCAGCAATGGTGCATAATAGTGGCCATGCCTCTGTGGCTAATGACAGTGGAGCTGTTAATCCTGGAAAAGAAGATAACCTTGTGATTGGTTATGATTGA 2214 0.4413 MPLYELYRLAREKLGKEINNTHAADQPSSPENDFLELVWEGGQISSQGQSSRVRKSPSCRSLPSHCLPSHSPKGRDKDVGYGNNTRMGKFGDLDSGLNEIPMSVPSREVDLSQDEDVIPWLDYTMDGSLQHEYSSDFLHELSGVTENDLPVSNSFTLLDKRSNGNQVFRDCHKNSAEPGNVSKGSSAEQVETARPKASTSQLYPPSSHQCQESYVSVRSRTSDITENNNASNVNHDVPYGEITQIPSSSSDLSSLKVQKQDPMMPSNGSAVMNFSHFARPAALVRANLQNIGLKSGLSSARSDNMGIKNKGVASTSSNPPESTLVDSSGECPKEPTMHCQQVAEQSKADLKPLQPKSLEQNAKASKQLEPACKESAIKIDQTSNLALGDSRAKGHTAAEKNTEPAVASSSVCSGNGADRGSDDPNQNLKRKSRDTEDSECHSEDVEEESVGAKKAASGRGTGSKRSRAAEVHNLSERRRRDRINEKMRALQELIPNCNKVDKASMLDEAIEYLKTLQLQVQIMSMGAGLYMPPMMLPAGMQHMHAAHMAPFSPMGVGMHMGLGMGYGMGMPDMSGGSSRFPTMIQVPQMQGTHIPVAHMSGPTALHGVARPSPGGFGLPGQGLPMPMPRAPVFPFSGGPLMNSSPLGLHASGSAGPVETVDSASASGLKDPMPNMDSQVKQSTGGCDSTSQMPTQCEAATVGFEQSAMVHNSGHASVANDSGAVNPGKEDNLVIGYD. 738
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g06840 737 SMART finulus 473 522 IPR011598 GO:0046983
Seca7g06840 737 CDD bHLH_AtPIF_like 467 529 IPR047265 -
Seca7g06840 737 MobiDBLite consensus disorder prediction 178 268 - -
Seca7g06840 737 MobiDBLite consensus disorder prediction 390 482 - -
Seca7g06840 737 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 464 527 IPR036638 GO:0046983
Seca7g06840 737 MobiDBLite consensus disorder prediction 465 482 - -
Seca7g06840 737 MobiDBLite consensus disorder prediction 173 268 - -
Seca7g06840 737 MobiDBLite consensus disorder prediction 402 422 - -
Seca7g06840 737 Gene3D - 462 525 IPR036638 GO:0046983
Seca7g06840 737 FunFam Basic helix-loop-helix transcription factor 462 525 - -
Seca7g06840 737 MobiDBLite consensus disorder prediction 423 453 - -
Seca7g06840 737 MobiDBLite consensus disorder prediction 45 65 - -
Seca7g06840 737 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 467 516 IPR011598 GO:0046983
Seca7g06840 737 MobiDBLite consensus disorder prediction 675 691 - -
Seca7g06840 737 MobiDBLite consensus disorder prediction 296 325 - -
Seca7g06840 737 MobiDBLite consensus disorder prediction 296 353 - -
Seca7g06840 737 Pfam Helix-loop-helix DNA-binding domain 471 517 IPR011598 GO:0046983
Seca7g06840 737 PANTHER TRANSCRIPTION FACTOR PIF3 1 692 IPR044273 GO:0003700|GO:0006355
Seca7g06840 737 MobiDBLite consensus disorder prediction 45 94 - -
Seca7g06840 737 MobiDBLite consensus disorder prediction 648 691 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g06840 Seca-Chr7 170916832 170922187 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g06840 1 616 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G09530 37.898 4.00e-87 282
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca7g06840 HLH 8.1e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g06840 K12126 - gmx:100794974 1109.75