Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g06831 ATGTCTTCTCCTATACTACTGACCAATCAACCTACTTTTGGAATGTTTGAAACTAAATTTTACGCCTATAAGGGCTTAATCAATATAGAACAGAAGTTTTGGGAAAAGTTTCGTGATCAGATTCCATCAGAGGTTTTTTTTACTGATCCTGCTGGAAATACATTTCCAGTAGGACTTTCTTTGAAAGGTGATAGGGCTGTGTTTAAACGAAATGTCGATACAATGACTAGATTTTATGGGCTGAGAAAAAAGCACAGTATGCTTTGTAAGTATAAGGGTGGTAACCAGTTTTATATATTGGTTGGTAATAGATATGGGGTTGAAATTAAGTATCCTGAAAGGAGGAACCCTGATGTAATTGTAGTATCTTCTGATGACTATGAAAGTGATCCTGAGGAGTACCCAGGATGGACTGTCACTTTGACAGGACCTGCTGCATCTGGGTCTAATCCATTGCTTATCCCTGCAAAATATGTCAGAAGAGTTCTTTCCAAAAATCAAAAGACTTTGACTATAAATGATGTAAATGGCGACAAAATAGGTTGTAAAATTTTGAAACCAAAAAGAAGAACAAATGAGCGATATCTTGGGAGGGGTTGGTACACCTTCTGTCGAAAGAAGAATTTCAAGGAGGGGGAAGAGCTTTATTTTTATACCAAGTGGGATGCTAAAAATTTGTGGGTCAAAAAGCTCAATAGTTAG 702 0.3689 MSSPILLTNQPTFGMFETKFYAYKGLINIEQKFWEKFRDQIPSEVFFTDPAGNTFPVGLSLKGDRAVFKRNVDTMTRFYGLRKKHSMLCKYKGGNQFYILVGNRYGVEIKYPERRNPDVIVVSSDDYESDPEEYPGWTVTLTGPAASGSNPLLIPAKYVRRVLSKNQKTLTINDVNGDKIGCKILKPKRRTNERYLGRGWYTFCRKKNFKEGEELYFYTKWDAKNLWVKKLNS. 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g06831 233 ProSiteProfiles B3 DNA-binding domain profile. 137 233 IPR003340 GO:0003677
Seca7g06831 233 Pfam B3 DNA binding domain 140 229 IPR003340 GO:0003677
Seca7g06831 233 SUPERFAMILY DNA-binding pseudobarrel domain 10 101 IPR015300 -
Seca7g06831 233 SUPERFAMILY DNA-binding pseudobarrel domain 133 225 IPR015300 -
Seca7g06831 233 Gene3D - 8 104 IPR015300 -
Seca7g06831 233 Gene3D - 133 229 IPR015300 -
Seca7g06831 233 PANTHER B3 DOMAIN-CONTAINING 24 218 - -
Seca7g06831 233 CDD B3_DNA 138 229 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g06831 Seca-Chr7 170780153 170784473 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Seca7g06831 B3 2.3e-10 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g06831 - K07005 lja:Lj0g3v0086279.1 73.1738