Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g06830 ATGGCTTCTATGATCAAAGGAGAATCTTCCAAAACAAAACCGCTGATCGATTATTTCCAAGCCAAGTTGGATCCATCTAAGGCTGTTATACCTATTGATAGGTGTTTTCTTCATTTGTGGGAAAATGTATTCAAAGAACGAGATTTTTACTTGAGAGATCCTGAGCAGAATTGTCATGTTGTGAGAACTATTAGGAATAGAAATGGTGATTATGAATTTTACCCGGGAGTGCAGTACATGGTTGAGTTTTATTGGTTGGAAGGAATCCATACCGTCCACTTGGCATATGCTGAAGAAATTGGGTGGACAGTGAAAGTTACAAAAGCAATTGCATCTGCAAATAACCCTTTGCCAATTCCTGCTAGAATTGTTCGAACAATTCTTAAAGAAAACCAACATATGGTGTATATTTTTGATGAGGAGGGAGAAGCTTTTATTGTTGATCTGATTCCTGGACGAAGGAGTTCAGAATGCTTCCTAGGAAAGGGATGGTATGAGTATGTTAAGCAGAAAAATCTGAAGGAGGGAGACAATGTGAAGTTAACATTCGGTTATAGCCATAGGGACATTGATTCCCATATAATTAAGGGTTGA 594 0.3805 MASMIKGESSKTKPLIDYFQAKLDPSKAVIPIDRCFLHLWENVFKERDFYLRDPEQNCHVVRTIRNRNGDYEFYPGVQYMVEFYWLEGIHTVHLAYAEEIGWTVKVTKAIASANNPLPIPARIVRTILKENQHMVYIFDEEGEAFIVDLIPGRRSSECFLGKGWYEYVKQKNLKEGDNVKLTFGYSHRDIDSHIIKG. 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g06830 197 ProSiteProfiles B3 DNA-binding domain profile. 102 197 IPR003340 GO:0003677
Seca7g06830 197 SUPERFAMILY DNA-binding pseudobarrel domain 103 183 IPR015300 -
Seca7g06830 197 Gene3D - 105 196 IPR015300 -
Seca7g06830 197 Pfam B3 DNA binding domain 108 183 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g06830 Seca-Chr7 170778650 170779541 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Seca7g06830 B3 3.6e-09 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g06830 - K09287 lja:Lj6g3v0497350.1 60.4622