Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g06818 ATGGCTTCGGTTGGTGTGGCACCAACTTCAGGTATGAGAGAAGCCAGTGGTCATGCTGCAGCAGGTGTTGATAGATTGCCAGAGGAGATGAACGATATGAAAATTAGGGATGATAGAGAAATAGAAGCCACAGTTGTTGATGGCAATGGAACGGAGACTGGACATATCATTGTAACTACCATTGGGGGTAGAAATGGTCAGCCGAAGCAGACTATAAGCTATATGGCAGAGCGTGTTGTAGGGCATGGATCATTTGGAGTTGTCTTCCAGGCTAAATGCTTGGAAAATGGTGAAACTGTGGCTATCAAGAAGGTTCTTCAAGACAAGAGGTATAAGAACAGGGAACTGCAAACGATGCGCCTTCTTGACCACCCGAATGTTGTCTCTTTGAAGCATTGTTTCTTTTCAACTACTGAAAAGGATGAACTATACCTTAATTTGGTACTGGAGTATGTTCCTGAAACAGTTCATCGTGTGATCAAACATTACAACAAGTTGAACCAAAGGTTGCCGCTGATTTATGTAAAGCTCTATACATACCAGATCTTTAGGGCATTATCTTACATTCACCGTTGTATTGGAGTCTGCCATCGGGATATCAAGCCTCAAAATCTATTGGTCAATCCACACACTCACCAGGTTAAATTATGTGACTTTGGAAGTGCAAAAGTCTTGGTTTTGGGCACTCCAACAAGGGAAGAGATTAAATGCATGAATCCTAATTATACAGAATTTAAGTTCCCACAGATTAAAGCACATCCATGGCACAAGATCTTCCATAAGCGCATGCCTCCAGAGGCTGTTGATTTGGTATCAAGACTACTACAATACTCTCCTAACCTGCGGTGCTCAGCTTTAGACGCCTTGACCCATCCTTTCTTCGACGAGCTTCGCGACCCAAATGCTCGCTTGCCAACTGGTCGTTTCCTTCCACCACTATTTAATTTCAAATCTCACGTTGTGGCTGAATTTGTGTTATTGGTGCTGTGTACCAGAACTGAAAGGAGTCCCAGTCGAGACTTTGGTGAAATTGGTTCCGGAACATGCGAGGAAGCAGTGCCCGTTTCTTGGCTTGTAATATGTCTTGAAATATTTAGAGATACACGCTACCACCCAATATTACCCAACCCTCGATGGGTATTCAGAATACTCCGTTCCCTGTATCACAGGTCACAGCAGATTAGAAAGGCCCGAAGAGGGAGAAGACGAAGGAGAATGCCGGTAAAGAAGTTCTACTGCGATTATTGCGATAGGCAATTCCCGGACACACCAGCGGATCGGAAGCGACACAATCGTGGCATTCAGCACCAACAAGCCAAAGCTCGTTGGTACGATTCCTTCAAATTCGAACAACAACAACCTCATCATCTTCCTATTCCATCCCCTAAACCCCTCTGTTTTCACTTCGTCAACACGGGATTTTGCCGTTACGGCGACTCTTGCAAATATATGCATCCCAATCCCAATAATATACCGCAGCCACAAGTTGCAGGGAATGTGAGAGATAGCATGAGAATGGGAATGGGAGTTTCATGGGACAATTTACCCCCATCGCTGCAGCCTCCGCCTGAGGGTGGATATCCCCAACTTCCCTTTGTTGATTGGGGTTCTGGGAGTAGATCTGTCAAAACTCAAAAGAGAACTGACTGGTAA 1653 0.4483 MASVGVAPTSGMREASGHAAAGVDRLPEEMNDMKIRDDREIEATVVDGNGTETGHIIVTTIGGRNGQPKQTISYMAERVVGHGSFGVVFQAKCLENGETVAIKKVLQDKRYKNRELQTMRLLDHPNVVSLKHCFFSTTEKDELYLNLVLEYVPETVHRVIKHYNKLNQRLPLIYVKLYTYQIFRALSYIHRCIGVCHRDIKPQNLLVNPHTHQVKLCDFGSAKVLVLGTPTREEIKCMNPNYTEFKFPQIKAHPWHKIFHKRMPPEAVDLVSRLLQYSPNLRCSALDALTHPFFDELRDPNARLPTGRFLPPLFNFKSHVVAEFVLLVLCTRTERSPSRDFGEIGSGTCEEAVPVSWLVICLEIFRDTRYHPILPNPRWVFRILRSLYHRSQQIRKARRGRRRRRMPVKKFYCDYCDRQFPDTPADRKRHNRGIQHQQAKARWYDSFKFEQQQPHHLPIPSPKPLCFHFVNTGFCRYGDSCKYMHPNPNNIPQPQVAGNVRDSMRMGMGVSWDNLPPSLQPPPEGGYPQLPFVDWGSGSRSVKTQKRTDW. 551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g06818 550 SMART ZnF_U1_5 408 443 IPR003604 GO:0003676|GO:0008270
Seca7g06818 550 ProSiteProfiles Zinc finger C3H1-type profile. 460 488 IPR000571 GO:0046872
Seca7g06818 550 ProSitePatterns Serine/Threonine protein kinases active-site signature. 195 207 IPR008271 GO:0004672|GO:0006468
Seca7g06818 550 Pfam Protein kinase domain 74 230 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca7g06818 550 CDD STKc_GSK3 69 297 IPR039192 -
Seca7g06818 550 ProSitePatterns Protein kinases ATP-binding region signature. 80 104 IPR017441 GO:0005524
Seca7g06818 550 PANTHER GLYCOGEN SYNTHASE KINASE-3 ALPHA 40 226 - -
Seca7g06818 550 Pfam U1 zinc finger 409 444 IPR013085 GO:0008270
Seca7g06818 550 Gene3D Classic Zinc Finger 408 452 - -
Seca7g06818 550 MobiDBLite consensus disorder prediction 512 550 - -
Seca7g06818 550 ProSiteProfiles Protein kinase domain profile. 74 439 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca7g06818 550 Gene3D Phosphorylase Kinase; domain 1 58 153 - -
Seca7g06818 550 MobiDBLite consensus disorder prediction 1 29 - -
Seca7g06818 550 SMART c3hfinal6 461 487 IPR000571 GO:0046872
Seca7g06818 550 SUPERFAMILY CCCH zinc finger 464 488 IPR036855 GO:0046872
Seca7g06818 550 Gene3D - 453 508 - -
Seca7g06818 550 SMART serkin_6 74 294 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca7g06818 550 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 464 486 IPR000571 GO:0046872
Seca7g06818 550 SUPERFAMILY Protein kinase-like (PK-like) 73 322 IPR011009 -
Seca7g06818 550 SUPERFAMILY beta-beta-alpha zinc fingers 409 453 IPR036236 -
Seca7g06818 550 FunFam Glycogen synthase kinase-3 beta 58 153 - -
Seca7g06818 550 Gene3D Transferase(Phosphotransferase) domain 1 154 225 - -
Seca7g06818 550 Gene3D Transferase(Phosphotransferase) domain 1 226 325 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g06818 Seca-Chr7 170653259 170660472 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g06818 74 231 MAP Kinase Gene Family AT2G42880 36.585 1.19e-24 105
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_GSK Seca7g06818 Pkinase 7.1e-35 CL0016
TF C3H Seca7g06818 Pkinase 7.1e-35 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g06818 K00924 - gmx:100780226 451.44