Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g06815 ATGCTCTCTCCAATTCCCAATAAGACAGAGCAGCGGAGAAGAAGCTTTGGAGAGAGAATGACAAATAGTGTCATTCCATTCGTGGTCATGGTTATAGTGCAATTGAGCTATGCAGGAATGAATATTACCTCAAAGCTTGCAATACAATCTGGGATGCACCCTCTTGTCCTTGTTGCTTATCGCCAAATCTTTGCGACTCTCTCCATTGCTCCCTTCGCTTATTGGTTTGAACGGAATACGGTTCCCCGGCTGACAATGCGCATTGGGTTCCAGATATTAATATCTTCCTTAACAGGAGTTACAGGCAATCAGGTGTTGTATTTCGTGGGGCTAAAATATTCAACCCCTACAATTGCATGTGCACTAACCAATTTGCTCCCAGCTTTCACTATTGTCCTTGCAGTCCTCTTCAGACAAGAGTTTTTGAGAATGAAGACGAAGTCCGGGATAGCGAAGGTGTTAGGGACAGTCCTGAGTGTGGGTGGAGCCCTGCTTTTATCATTTTACCATGGAAAAGCCCTTAATCTAGGTGAGTCAATAATTCACTGGGGATATGCAGACAGAATGGAAAACACAACCTCCTCCTCCAGTAGTAAAACAAACTTGCTTCTAGGCCCTATTGCCGTAATTGTCAGTTCTCTTGTTTGGGCAGTATGGTTCATAATTCAAGCTGACATGAGCAAGAGTTTTCCAGCTCCTTATACGAGTAGCCTCTACATGTGTTTATTAGGAAGCATTCAGTGTGTGGCCATTGCCTTGTGTTTTGAACACAATGTCTCAGCTTGGTCACTCGATGATACTATGAGACTTACTTCTGCACTTTATGCGGGAATTATTTCCACGGGGCTAACGTATGTTCTCCTTTCATGGACCATTGATAGGAAAGGTCCTCTCTATGTTTCTGTATTCTCTCCTTTGTTGCTTGTCATCACCGCCGTTGTCAGCTGGGCTCTGCTTCATGAGAAAATATATGTTGGCACTGTCATAGGGTCTGTCCTGATAATTTTCGGGCTCTATTCTGTTTTGTGGGGAAAGAGCAAAGAGATGGATCAGAAAGAGGGAAATCAAGGGATGGTCACAGAAACAATCAAGGATGAGAAGGATGAGATGAATGATATGGAATTGCAAACCTATAATCCTTCTAATCGTGCAGAAGAGATGGGGTTGTCTTTCACCAAACTTTTTAGCCGGCTCTTTGCCAAGAAAGAGATGCGTATTCTAATGGTAGGTCTTGACGCTGCTGGTAAGACTACCATCCTGTACAAGCTCAAGCTGGGAGAAATTGTGACAACCATTCCCACAATTGGATTTAATGTGGAGACTGTGGAATATAAGAATATTAGCTTTACTGTATGGGATGTGGGTGGCCAAGATAAGATACGCCCTTTATGGAGACACTACTTCCAGAACACACAAGGACTTATCTTTGTCGTCGATAGCAATGATCGTGACCGTGTTGTTGAGGCTAGAGATGAGCTCCACCGAATGTTGAATGAGGATGAGTTGAGAGATGCTGTACTCCTCGTATTTGCCAACAAGCAAGATCTTCCAAATGCTATGAATGCTGCAGAAATCACAGACAAGCTTGGTCTTCATTCTCTTCGTCAACGCCACTGGTATTCAGATACATTTCTGGTACATTCAGAGCACATGTGCCACCTCGGGGGAAGGACTCTATGA 1680 0.4375 MLSPIPNKTEQRRRSFGERMTNSVIPFVVMVIVQLSYAGMNITSKLAIQSGMHPLVLVAYRQIFATLSIAPFAYWFERNTVPRLTMRIGFQILISSLTGVTGNQVLYFVGLKYSTPTIACALTNLLPAFTIVLAVLFRQEFLRMKTKSGIAKVLGTVLSVGGALLLSFYHGKALNLGESIIHWGYADRMENTTSSSSSKTNLLLGPIAVIVSSLVWAVWFIIQADMSKSFPAPYTSSLYMCLLGSIQCVAIALCFEHNVSAWSLDDTMRLTSALYAGIISTGLTYVLLSWTIDRKGPLYVSVFSPLLLVITAVVSWALLHEKIYVGTVIGSVLIIFGLYSVLWGKSKEMDQKEGNQGMVTETIKDEKDEMNDMELQTYNPSNRAEEMGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYSDTFLVHSEHMCHLGGRTL. 560
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g06815 559 ProSiteProfiles small GTPase Arf family profile. 397 559 - -
Seca7g06815 559 SMART rab_sub_5 404 554 - -
Seca7g06815 559 SUPERFAMILY Multidrug resistance efflux transporter EmrE 60 168 - -
Seca7g06815 559 PANTHER WAT1-RELATED PROTEIN 26 353 IPR030184 GO:0016020|GO:0022857
Seca7g06815 559 Pfam ADP-ribosylation factor family 391 540 IPR006689 GO:0003924|GO:0005525
Seca7g06815 559 PRINTS GTP-binding SAR1 protein signature 433 457 IPR006689 GO:0003924|GO:0005525
Seca7g06815 559 PRINTS GTP-binding SAR1 protein signature 460 485 IPR006689 GO:0003924|GO:0005525
Seca7g06815 559 PRINTS GTP-binding SAR1 protein signature 505 526 IPR006689 GO:0003924|GO:0005525
Seca7g06815 559 PRINTS GTP-binding SAR1 protein signature 405 428 IPR006689 GO:0003924|GO:0005525
Seca7g06815 559 SMART sar_sub_1 387 551 IPR006689 GO:0003924|GO:0005525
Seca7g06815 559 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 400 540 IPR027417 -
Seca7g06815 559 Gene3D - 386 552 IPR027417 -
Seca7g06815 559 Pfam EamA-like transporter family 204 342 IPR000620 GO:0016020
Seca7g06815 559 Pfam EamA-like transporter family 28 167 IPR000620 GO:0016020
Seca7g06815 559 NCBIfam small GTP-binding protein domain 402 524 IPR005225 GO:0005525
Seca7g06815 559 FunFam ADP-ribosylation factor 1 388 555 - -
Seca7g06815 559 SMART arf_sub_2 387 559 - -
Seca7g06815 559 CDD Arf1_5_like 404 540 IPR045872 GO:0003924
Seca7g06815 559 SUPERFAMILY Multidrug resistance efflux transporter EmrE 241 347 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g06815 Seca-Chr7 170607288 170623214 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g06815 22 372 Nodulin-like Gene Family AT1G09380 55.840 5.52e-140 408
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g06815 - - gmx:100802059 545.043