Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g06787 ATGGAGGATAAGAAGAAGACGATGCTTCCATCACCATCACACACTAAAGTTAGGGGCTTTCAAAGCCTTGTTGGACCTGCCACCAATGCAGCTGCTTCCGGAAAGCTCTATTCTCTCAATGACTCGGAGAGTTTCTACTCCAAACTCACTGAGTTGTTGGACTCCTCTGGACTCAGTCTAATTTTCAATGTCCGAGAAACATTGTTGGACTTGCACTTGTTTTACTTGGAGGTGACCAGAAGAGGAGGATATCACCAGGTTGGCCGAGAAAAGAAATGGGTTGAAGTGGTCTCTGCCCTAAAATTGGAAGGCAATAATGCAAAGTTATCTGCTCAAGTTGAAAAGCTCTATGCACACCTTCTTTATGAATTTGAGCAATTGTACTTCTACAGGTGTCCTCAAAAGCAACCTGCAGCTAGCACCAGCAAAGGTCCACTTAAGAGGAAGCATGATTCAATGGCTAGTTTTTCTCAATTAATGGATGGTGAATATGGTCAGAAGGTGACAAAGATGTGTGAGGACTGCTCTTGCCAAATGAAAGAACAACCAGTGATTCTTCCTCAAGTGACAAAGAAACCAAGAAACCAAGAAACAAAGAAACGGCCAGGTGCTCCAGGAGGAAGGAATGCATATCATATATTCCTCAAGCAGGAATGTGCTCGATTGAGAACTTGTAATAAGGCCTCAAATGGCCCAAAAACCCTAAGAATGGCTGTTGATGCATGGAAGAAGATGTCTGAGATTGAGAAACAGGTACATAGAAGTTAA 768 0.4297 MEDKKKTMLPSPSHTKVRGFQSLVGPATNAAASGKLYSLNDSESFYSKLTELLDSSGLSLIFNVRETLLDLHLFYLEVTRRGGYHQVGREKKWVEVVSALKLEGNNAKLSAQVEKLYAHLLYEFEQLYFYRCPQKQPAASTSKGPLKRKHDSMASFSQLMDGEYGQKVTKMCEDCSCQMKEQPVILPQVTKKPRNQETKKRPGAPGGRNAYHIFLKQECARLRTCNKASNGPKTLRMAVDAWKKMSEIEKQVHRS. 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g06787 255 SUPERFAMILY HMG-box 187 252 IPR036910 -
Seca7g06787 255 Gene3D High mobility group box domain 188 255 IPR036910 -
Seca7g06787 255 Gene3D - 28 148 IPR036431 GO:0003677
Seca7g06787 255 ProSiteProfiles ARID domain profile. 39 129 IPR001606 GO:0003677
Seca7g06787 255 CDD HMG-box_SF 208 252 - -
Seca7g06787 255 SUPERFAMILY ARID-like 41 132 IPR036431 GO:0003677
Seca7g06787 255 SMART bright_3 40 130 IPR001606 GO:0003677
Seca7g06787 255 SMART ARID_2 36 125 - -
Seca7g06787 255 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 40 252 - -
Seca7g06787 255 Pfam ARID/BRIGHT DNA binding domain 42 125 IPR001606 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g06787 Seca-Chr7 170278116 170280996 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g06787 69 157 ARID Transcription Factor Family AT1G76110 36.264 3.83e-13 66.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Seca7g06787 ARID 7.2e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g06787 - - pvu:PHAVU_007G202100g 264.618