Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g06756 ATGGTAAGGGGAGGAAAGTTTAGTGGCAAAAGCAATTTCAGGAAAAAAGGTCGGTCAAAGGAGGGAAGTTCTGATGATTCTGATGAGGACTATGTGGTCTCAGATGAAGGTAGAGACGTCTCTGACTATTATTGCTCCTCGTTGGATGGATGTGCATCAGAGGAGAGTTTTGATAGTTTTATTGAGGATGAGGAATTTCAAGGAGTGAGGAATTCTAATAGATCCAAGGCAAAAAATCGCATTCGTGGTGGTCGGAAGAAAAATGCAAGTAAAAACTCACGAAAGAGGGGAAGGATTACATATGCAAAACAAGAAGGAGAGGAAGAGGAAGAGGAGGAGGGGGAAATTCAAGGAATGTGGACTTCCATTAGATCAAAGGTCCAAAACGGTGTTTGTGGTAAGCGAAAAAATGCAAGTAAAACCTCACAAAAGAGGGGAAGGATATCACATGCAGAACAACTAGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGATAGAGGAAGCGAAGGAGGAGGAGGAGAAAGAGGAGGAAGAGGGGGAGGAGGAGGAGATAGAGGAGAAAAAGGAGAGGGAGCAAGAAGAGGAGGTGGAGAGAGATGCAGATGAGGAAGAGGAGGAAGAGGGAGAGGGGGATGGAGATGAGGATTTTGACTTTGATGATGAGGATGATGAATTTACACCAGAAGATGATGAATTTCCAGAAGATGATGAATTTACAGCAGAGGAAGAAGATTATTCAGATGAGGAAGAAGAAATGAGTGGGAGGCAGAAGAAAAATAATGGCATGAAAATGGGCAAGAAGGTGTTGAAGAAAAAGGCCTCTGTGGTTTCTACCAGGGGTCGAAAAAGGCGAAGTTCTAGAGCATCAAAGAAGCCCATGAGAACCAAACCAAGAAAGAATGGGAGGTTAAGGAGGAAAGTAAAATGTGACAATGAAGGTGATTTTATAGATAATGGCCCAGCCATCAGGACAAGTAGGAAAAAACAGGCCCGAAAGAGGAGAAGGATGATTCTTTCAGATTCAGATTGTGTGTCTTTGGGATCAACTGATTTTGAGTATACCATATCTGAAGAAGAGAGAGAACAGGTGAGAGAAGCCAAGAAATTGTGTGGAAGCTTGAGAAATAACTTGAGGAGTTCATCCCTTCAAATAAACAATGAAGAGGCTGGAGTCCAAGAAGATCTAAATCTGCAACACAAGCCCCCAGGTCGGAAGGGTAAGGAGAAGATAGAAGAACCTCAAGGAAGAAAGGGTAAGGAAAAGGTGGAGAACTTAAAAAGTGAGGTGGGAAAGCAGGTGTGTGGAATTTGTTTGTCTGAGGAAGATAAAAGAAGAGTAAGGGGAGTACTAAATTGTTGCACTCACTATTTTTGTTTTGCTTGCATTATGGAGTGGGCAAAGGTGGAATCTCGCTGCCCTTTGTGTAAGCAGAGATTCAAAACAATCAGTAAGCCTGCACGATCAACAACAGGAATTGATTTAAGAGAAGTGGTGATACAAGTCCCTGAACGAGACCAGGTTTATCAGCCCTCTGAAGAAGAACTCAGGAGCTATATTGATCCCTATGAGTATGTTATTTGTTCAGAGTGTCATCTAGGTGGAGATGATGGCCTCATGTTACTCTGTGATATCTGTGATTCCCCTGCACACACATATTGTGTTGGTTTAGGGCGGGAAGTTCCTGAAGGTAATTGGTATTGTGATGGCTGTAGACCAGTTGCTTTGGGATCTTCAAGCTCCCAAGTTCAAGAAGCTGAACCAAGGGTGACAATCCAGAGCCTGCCTGCTAGACCATCCCCTCTTCTACATGTACGAGAAAGTATAGACCTCAACTTGATCTCTTCACCCCGTGCAGTTTCCAATCAAGGATTTGTGCATCTTTCATCTTCTAGATTTATTGGGAGAAGTGTCGATGGAGCTTCTCCAGTATCTGGAGGGGCACCAACTTTATCAGAGAGACGCTGGATACAACGTCAAATTCATCAGCTACGTTCAGTAGATAGGATGGCTACTACAACTGGCAGAACTAATGGCATTTCAGCTATCAGTTCAACTAGTAACTTGTATAGCTCTCAAATTGATCAATGTAGGGAAACAGCCCCTCAAAATGCAAGGACACAGGATGTGGGAACATCATACCACACATTCTTTGAAGAGAGATTATACAACAATATTTCTCCATTAATGCAGAATGGGACATCATGGCCTGGACATGTGGGTCCACCTTCAGTACCTGATTGTGAACAAGTCCATCAGTTCAGCAGATCAAACATGGTCACTGATGGTAGCTCATCCCCTGCCGTAATAGAAGACTTTCACATTGTGAAGGAGCAGGTGCACTCAATGGTTAAAAGCCACCTAAAGAGCCTGTCCCAAAATATTGATTTAAGCCACAGTACTCTCAAGGACATTGCAAGGAGTTGTATGCACACCATACTAGCAGCTTGTGGTCTTGAGCACATGAAGAATGAGGTTCGCACTGTGCCTCCCCCATCCGTCTGTCCGCACATTGAACTGACGGCTGGTGCGCAATCGAGTCTGATTAATGGTTGCTGCTCATCTTGCTTTGATTCTTTTGTAGGAGATGTGGTGAAGAGGATTTTGGATACAAGAATGCCCTCCCAGTGGTTACGATTAGGTCTTTAG 2652 0.4393 MVRGGKFSGKSNFRKKGRSKEGSSDDSDEDYVVSDEGRDVSDYYCSSLDGCASEESFDSFIEDEEFQGVRNSNRSKAKNRIRGGRKKNASKNSRKRGRITYAKQEGEEEEEEEGEIQGMWTSIRSKVQNGVCGKRKNASKTSQKRGRISHAEQLEEEEEEEEEEEEIEEAKEEEEKEEEEGEEEEIEEKKEREQEEEVERDADEEEEEEGEGDGDEDFDFDDEDDEFTPEDDEFPEDDEFTAEEEDYSDEEEEMSGRQKKNNGMKMGKKVLKKKASVVSTRGRKRRSSRASKKPMRTKPRKNGRLRRKVKCDNEGDFIDNGPAIRTSRKKQARKRRRMILSDSDCVSLGSTDFEYTISEEEREQVREAKKLCGSLRNNLRSSSLQINNEEAGVQEDLNLQHKPPGRKGKEKIEEPQGRKGKEKVENLKSEVGKQVCGICLSEEDKRRVRGVLNCCTHYFCFACIMEWAKVESRCPLCKQRFKTISKPARSTTGIDLREVVIQVPERDQVYQPSEEELRSYIDPYEYVICSECHLGGDDGLMLLCDICDSPAHTYCVGLGREVPEGNWYCDGCRPVALGSSSSQVQEAEPRVTIQSLPARPSPLLHVRESIDLNLISSPRAVSNQGFVHLSSSRFIGRSVDGASPVSGGAPTLSERRWIQRQIHQLRSVDRMATTTGRTNGISAISSTSNLYSSQIDQCRETAPQNARTQDVGTSYHTFFEERLYNNISPLMQNGTSWPGHVGPPSVPDCEQVHQFSRSNMVTDGSSSPAVIEDFHIVKEQVHSMVKSHLKSLSQNIDLSHSTLKDIARSCMHTILAACGLEHMKNEVRTVPPPSVCPHIELTAGAQSSLINGCCSSCFDSFVGDVVKRILDTRMPSQWLRLGL. 884
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g06756 883 SMART PHD_3 528 573 IPR001965 -
Seca7g06756 883 Pfam PHD-finger 528 574 IPR019787 -
Seca7g06756 883 ProSiteProfiles Zinc finger PHD-type profile. 526 575 IPR019787 -
Seca7g06756 883 SUPERFAMILY RING/U-box 435 484 - -
Seca7g06756 883 Coils Coil 358 378 - -
Seca7g06756 883 MobiDBLite consensus disorder prediction 262 306 - -
Seca7g06756 883 MobiDBLite consensus disorder prediction 386 423 - -
Seca7g06756 883 Coils Coil 147 211 - -
Seca7g06756 883 MobiDBLite consensus disorder prediction 121 137 - -
Seca7g06756 883 MobiDBLite consensus disorder prediction 75 97 - -
Seca7g06756 883 MobiDBLite consensus disorder prediction 400 423 - -
Seca7g06756 883 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 516 596 IPR013083 -
Seca7g06756 883 PANTHER F18C1.6 PROTEIN 138 872 - -
Seca7g06756 883 MobiDBLite consensus disorder prediction 65 336 - -
Seca7g06756 883 ProSiteProfiles Zinc finger RING-type profile. 436 478 IPR001841 -
Seca7g06756 883 SUPERFAMILY FYVE/PHD zinc finger 498 574 IPR011011 -
Seca7g06756 883 SMART ring_2 436 477 IPR001841 -
Seca7g06756 883 CDD RING-HC_Topors 434 481 - -
Seca7g06756 883 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 413 499 IPR013083 -
Seca7g06756 883 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 162 181 IPR003903 -
Seca7g06756 883 Pfam Ring finger domain 435 478 IPR001841 -
Seca7g06756 883 MobiDBLite consensus disorder prediction 154 251 - -
Seca7g06756 883 ProSitePatterns Zinc finger RING-type signature. 455 464 IPR017907 -
Seca7g06756 883 MobiDBLite consensus disorder prediction 1 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g06756 Seca-Chr7 169961819 169965136 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g06756 523 572 C2H2 Transcription Factor Family AT3G01460 46.154 1.12e-08 57.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Seca7g06756 PHD 1.4e-08 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g06756 - - gmx:100797448 986.482