Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g06736 ATGGCCACAAACATGAAGACATCCACTCTTGTTTTTCCCCTCTTGTTTCTCTTATTCCTTTCTCCCTCTCTTGCAGCTTTATTCTCAGCCTCCCCAAACACCACATGTGACCTCACACCCTATCCAGCATTCTGCACAACTACTCTGCCTTCTAACTATTTCTATTTATCCATACATGACCAAGCCCGCTTCTTCCTTCAACATTCCTTATCAACAACAAAAACGATTCTTGAATTGATCTCTTCTTATCTCAGAGACCAGTCCACAATTCCTGATTCCACACTAAATGCCCTTGAAGATTGTCTCAATCTTGCTGAACTTAATATTGATTTCTTGTCCAATGTCCTCCAAGCCGTCCAAAAAACTACTACCATAACTACCTATCAGGCTTATGATTTGCAAACCTTTCTTAGTGCCATTTTAACCAATCAACAAACATGCTTAGATGGTTTTCATGAGGTAACTCCTTATCCTAGAGTCACCAGTGGCTTATCAAGCCCTCTTTCTGATGGAATCAAACTTTATAGCATATCTCTGGCTCTTTTCACCCGCGGTTGGGTTAGCAATGCCACAGGAAGATCAAAAACAGTTGAAATGACCATGAATAGAAAGTTACTGCAGAAAAACATTGACAATTTAGTGGTGACAAAAAAGGTGGTGGTCAACCCTGATGGTTCTGGGGATTTCACAACCATAAATGATGCAGTGGATGCTGCACCTAACAATACCGGCACCAACAATGGGTACTATGTAATTTATGTTGTTGCTGGGATTTACAATGAGTACGTGTCTATTGCTAAGAGCAAGGAGAATCTTATGATCATTGGAGATGGTATCAACAGCACTGTGATCACAGGCAATCGTAGCGTGGTTGATGGTTGGACCACTTTTCAATCCGCCACTTTTGCTGTGGTAGGAAAAGGGTTTGTTGCAGTGAACATAACATTTCGCAATACTGCGGGGTCCAGCAAGCATCAAGCGGTAGCTGTGAGAAATGGGGCGGACATGTCATCATTCTACAATTGTAGTTTTGAAGGGTACCAAGACACACTGTACGCTCATTCCCTTAGGCAATTTTTCAAAAACTGTGACATTTATGGCACAGTGGATTTTATATTTGGCAATGCAGCAGCAGTATTCCAGAGCTGTAACATGTATCCAAGACTTCCTATGCAAAACCAATTCAATGCAATCACAGCACAAGGCAGAACAGATCCTAACCAGAACACTGGATTCTCCATACAGAACTGTTGCCTAGTAGCTGCCAGTGAGTTAGGTGATGCTAGTAGTAATTATAATAACATAAAGACATATTTGGGTCGGCCTTGGAAGGAGTATTCAAGGACGGTTTATATTCAATCTTTCATGGATGGCCTAATTGATCCAAAGGGTTGGATTGAATGGTCAGGGGATTTTGCTTTAAGCACACTGTATTATGCAGAATTTGCTAACTGGGGACCAGGTTCAAATATTAGCAATAGGGTCACATGGGGAGCTGTTCAAGGAGATTACTTTGTGGCAATCAATATAGGGTTTGAGAATTCTGCTGGTCCTCACAAACATCAAGCAGTGGCCATAAGGGTTCAAGCAGACAAGTCCATATTTTACAAATGCACAATGGACGGGTATCAAGACACACTATATGCCCATGCCATGCGTCAATTCTATAGGGATTGCACAATTTCAGGCACAATTGATTTTATCTTTGGTGATGCAGTAGCTGTATTTCAGAATTGTACTTTCGTGATTAGAAAGCCGTTGGAAAATCAACAATGTATTGTAACTGCACAGGGAAGGAGGGAGAGGCATCAACCATCAGGAATTATCATTCAAGGGGGTTCCATTGTGTCTGATCACACAGTGAAGTTTGATAACAAGGCCTACTTAGCTCGTCCATGGAAGAATTTCTCTAGGACCATCTTTATGGATACTTATATTGATGGTTTGATTCAACCTGATGGATATATGCCATGGCAAGGACCACAGGGTCCTTCTGGTATGAACACATGTTTCTATGCAGAGTACAACAACACTGGACCTGGTTCTGATAAATCAAAACGTGTAAAATGGCGTGGGATCAAGACCCTCACATCACAATCCGCAACTAAATTCATACCAGCTAAATTCTTTCATGGAGATGACTGGATCAGGGTTACTAGGATACCTTACTCCTCTGGCTTGCCCCGCCACACAAGCACTAAATAA 2205 0.4172 MATNMKTSTLVFPLLFLLFLSPSLAALFSASPNTTCDLTPYPAFCTTTLPSNYFYLSIHDQARFFLQHSLSTTKTILELISSYLRDQSTIPDSTLNALEDCLNLAELNIDFLSNVLQAVQKTTTITTYQAYDLQTFLSAILTNQQTCLDGFHEVTPYPRVTSGLSSPLSDGIKLYSISLALFTRGWVSNATGRSKTVEMTMNRKLLQKNIDNLVVTKKVVVNPDGSGDFTTINDAVDAAPNNTGTNNGYYVIYVVAGIYNEYVSIAKSKENLMIIGDGINSTVITGNRSVVDGWTTFQSATFAVVGKGFVAVNITFRNTAGSSKHQAVAVRNGADMSSFYNCSFEGYQDTLYAHSLRQFFKNCDIYGTVDFIFGNAAAVFQSCNMYPRLPMQNQFNAITAQGRTDPNQNTGFSIQNCCLVAASELGDASSNYNNIKTYLGRPWKEYSRTVYIQSFMDGLIDPKGWIEWSGDFALSTLYYAEFANWGPGSNISNRVTWGAVQGDYFVAINIGFENSAGPHKHQAVAIRVQADKSIFYKCTMDGYQDTLYAHAMRQFYRDCTISGTIDFIFGDAVAVFQNCTFVIRKPLENQQCIVTAQGRRERHQPSGIIIQGGSIVSDHTVKFDNKAYLARPWKNFSRTIFMDTYIDGLIQPDGYMPWQGPQGPSGMNTCFYAEYNNTGPGSDKSKRVKWRGIKTLTSQSATKFIPAKFFHGDDWIRVTRIPYSSGLPRHTSTK. 735
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g06736 734 NCBIfam pectinesterase inhibitor domain 6 182 IPR006501 GO:0004857
Seca7g06736 734 SUPERFAMILY Pectin lyase-like 216 498 IPR011050 -
Seca7g06736 734 ProSitePatterns Pectinesterase signature 2. 365 374 IPR033131 -
Seca7g06736 734 PANTHER PECTINESTERASE 21 499 - -
Seca7g06736 734 Pfam Plant invertase/pectin methylesterase inhibitor 33 181 IPR006501 GO:0004857
Seca7g06736 734 CDD PMEI-like_3 34 186 - -
Seca7g06736 734 Gene3D - 500 727 IPR012334 -
Seca7g06736 734 Gene3D - 213 499 IPR012334 -
Seca7g06736 734 SUPERFAMILY Pectin lyase-like 499 726 IPR011050 -
Seca7g06736 734 SMART PMEI_2 27 181 IPR006501 GO:0004857
Seca7g06736 734 FunFam Pectinesterase 500 727 - -
Seca7g06736 734 FunFam Pectinesterase 212 499 - -
Seca7g06736 734 Gene3D Invertase/pectin methylesterase inhibitor family protein 30 184 IPR035513 -
Seca7g06736 734 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 33 184 IPR035513 -
Seca7g06736 734 ProSitePatterns Pectinesterase signature 2. 561 570 IPR033131 -
Seca7g06736 734 Pfam Pectinesterase 219 499 IPR000070 GO:0030599|GO:0042545
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g06736 Seca-Chr7 169744652 169749855 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g06736 499 727 Carbohydrate Esterase AT4G02330 48.305 2.85e-69 236
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g06736 K01051 - gmx:100810329 776.548