Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g06734 ATGTTCATTTATGACAGGAGTTGTTTAAACATCAAAATGTCTGGGGGAGATGCACAGAAGGGAAAGAACATTGCAATCATTGGTGTATCTGCCTTATTACTAGTGGCTATGGTTGTGGCCGTCACAGTTAGTTACAATAAAAACGGTTCGGAAAATGATATAGAGGACAACAGGAAGCACCATGTGGCTTCCACAATCAAAGCAGTCCAAACCCTTTGCCATCCCACGGATTATAAGAAGGAATGTGAGGAAAGCCTCATAGCAGAGGCTGGCGACACCACTGACCCAAAAGAATTGATCAAAATTGCCTTTAACGTTACCATTAAGAAAATCGGTGACAAACTCAAGGAAACAGAGCTCTTGCACGAGGTTGAGAAGGAACCTAGAGCCAAGATGGCACTTGACACGTGTAAGCAACTCATGGATCTTTCAATTGAGGAACTCAAGAGGTCACTTGATGAAATAGGTGAGTTTGATCTCACAAATCTTGACAAGATCCTCATGAATTTAAAGGTTTGGCTAAGCGGTGCAGTGACATACCAAGATACATGCTTGGATGGGTTTGAGAACACCACGAGCGAAGCAAGTGCAAAGATGAAGGACCTATTAACAACAGGCATGCACATGAGTAGCAATGCCCTTGCCATTGTTTCTGATTTTGCTGACACTGTCTCAGATTGGAATGTCACAAAGTTATTTGGGCGTCGCCTCCTTCAAGATTCTGAGAAGACTCCTTCTTGGGTTGATGAACGAACTCTCCTTGATACAAACACAAGTACATTCCAGCATAAGCCTAATTTGACTGTGGCCATAGATGGTAGTGGAGATTTCAAGAGCATCAATGAGGCATTGAAGCATGTGCCTGAGGACAATGAAGAGCCATTTGTCATATACATCAAGGAAGGCATTTACCAAGAGTATGTTGAAGTTACCAAGCAAATGACCTATGTGGTGTTTGTTGGTGATGGTGGCCAAAAGACAAGAATCACTGGCAACAAAAACTTCATAGATGGGATTAACACCTACAGAACCGCTACAGTTGCAATTCAAGGAGATCATTTTGTTGCTATGAATATGGGTTTTGAGAACTCAGCTGGGCCCCACAAGCATCAAGCAGTGGCATTGAGGGTTCAAGGAGACAAGTCCATCTTCTTCAATTGCTCAATGGATGGATATCAGGACACACTTTATGTACACACCATGCGTCAATTCTATAGAGATTGCACTATTTCAGGTACCATTGACTTCGTCTTTGGTAATGCGCTGTCTGTTTTCCAGAACTGCACTTTTGTGGTTCGGAAGCCATTGAAAAATCAGCAATGCATTGTGACGGCACAAGGAAGGAAAGAAAGGCAACAACCATCAGGAATAGTGATCCAAGGAGGATCCATTGTGTCTGATCCTCTGTTTTACGCAGTGAGGTTTGAGAATAAGGCGTACCTTGCTCGTCCGTGGAAGAATTTCTCAAGGACCGTCTTCATGGATACATACATTGACGATTTGATTCATCCTGATGGATATTTGCCATGGCAAGGAGAAGAGGGTCCTTCTGGTATGAACACTTGCTTTTATGCTGAGTACCATAACACTGGTCCCGGTTCTGATAAATCCAAGCGTGTCAATTGGGCTGGGATATGGAACCTCAATTCAAAAGCTGCAAACTGGTTCTCACCATCCAAGTTCTTTCATGGGGATGACTGGATTGAGGTTACTGGGATTCCTTACTTTGCTGGTGTTCCCACCCACCACAGGCACAAAAAGACAATACTTAATTGGTGA 1779 0.4328 MFIYDRSCLNIKMSGGDAQKGKNIAIIGVSALLLVAMVVAVTVSYNKNGSENDIEDNRKHHVASTIKAVQTLCHPTDYKKECEESLIAEAGDTTDPKELIKIAFNVTIKKIGDKLKETELLHEVEKEPRAKMALDTCKQLMDLSIEELKRSLDEIGEFDLTNLDKILMNLKVWLSGAVTYQDTCLDGFENTTSEASAKMKDLLTTGMHMSSNALAIVSDFADTVSDWNVTKLFGRRLLQDSEKTPSWVDERTLLDTNTSTFQHKPNLTVAIDGSGDFKSINEALKHVPEDNEEPFVIYIKEGIYQEYVEVTKQMTYVVFVGDGGQKTRITGNKNFIDGINTYRTATVAIQGDHFVAMNMGFENSAGPHKHQAVALRVQGDKSIFFNCSMDGYQDTLYVHTMRQFYRDCTISGTIDFVFGNALSVFQNCTFVVRKPLKNQQCIVTAQGRKERQQPSGIVIQGGSIVSDPLFYAVRFENKAYLARPWKNFSRTVFMDTYIDDLIHPDGYLPWQGEEGPSGMNTCFYAEYHNTGPGSDKSKRVNWAGIWNLNSKAANWFSPSKFFHGDDWIEVTGIPYFAGVPTHHRHKKTILNW. 593
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g06734 592 PANTHER PECTINESTERASE 27 569 - -
Seca7g06734 592 NCBIfam pectinesterase inhibitor domain 63 217 IPR006501 GO:0004857
Seca7g06734 592 FunFam Pectinesterase 65 221 - -
Seca7g06734 592 CDD PMEI-like_3 71 221 - -
Seca7g06734 592 Pfam Pectinesterase 266 565 IPR000070 GO:0030599|GO:0042545
Seca7g06734 592 FunFam Pectinesterase 260 579 - -
Seca7g06734 592 SMART PMEI_2 64 216 IPR006501 GO:0004857
Seca7g06734 592 Gene3D Invertase/pectin methylesterase inhibitor family protein 64 220 IPR035513 -
Seca7g06734 592 ProSitePatterns Pectinesterase signature 2. 410 419 IPR033131 -
Seca7g06734 592 Gene3D - 260 579 IPR012334 -
Seca7g06734 592 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 68 220 IPR035513 -
Seca7g06734 592 Pfam Plant invertase/pectin methylesterase inhibitor 68 216 IPR006501 GO:0004857
Seca7g06734 592 ProSitePatterns Pectinesterase signature 1. 291 310 IPR018040 -
Seca7g06734 592 SUPERFAMILY Pectin lyase-like 261 578 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g06734 Seca-Chr7 169728553 169730645 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g06734 17 579 Carbohydrate Esterase AT3G05610 49.912 0.0 607
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g06734 K01051 - gmx:100803527 1009.98