Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g06720 ATGCAGTGTGTGAGCTCATATTCTCTCCCTAAGAATTTGGCCTCAGTCATCAGTTTCTGGAAGCTTGAAGAACATCGTCTTCGGTTCTTCGCATCTCAGACAGGGTTTGATTCTTTTATTGCCATCTTCCTTTTCCTCTCCTCGAAACTTGTAAGAGCGTTGATCGATTTAGCTGCTGCATATATTTTAATTCCAACTCCGTTAGGCCGATTATCGTTTGGCGCGGCCTCGTCGCCGAGTGATTCTGTGACAGGGAAAAGGAAAAAAATGAGTGGCCGCTCAAGTCGCACAATTTATGTTGGCAACCTTCCTGGTGATATTCGCTTGAGAGAAGTAGAGGATCTTTTCTACAAGTATGGTCCTATTGTTGACATTGATTTGAAGATTCCTCCAAGACCACCGGGTTACGCTTTTGTTGAGTTTGAGGATGCTCGTGATGCTGAAGATGCCATTCACTATCGAGATGGTTACAATTTTGATGGCTTTCGATTACGAGTTGAATTTGCACATGGTGGACGGGGATATTCATCATCAGTAGACCGTTATAGTAGTTATAGTGGTAGCAGTGGTAGCCGTGGTGTTTCCAGGCGTTCTGACTATCGTGTTCTGGTGACTGGATTACCTCCTTCTGCTTCATGGCAAGACCTGAAAGATCACATGCGTAAAGCTGGTGATGTGTGTTTTTCTCAAGTATTCCGGGAGCGTGGAGGCATGACTGGGATAGTGGATTATACCAATTATGATGATATGAAATATGCCATCAGGAAACTTGATGACTCAGAATTTCGAAATGCCTTTTCTCGGGCATACATACGGGTGAGGGAATATGATCGGGGTTATTCAAGAAGTCCTAGTTGTGATTCAAGGAGGAGCTATTCTAGAAGCCCCAGCCGTAGTCCATATATATCACGAAGTCGAAGCCGCAGTCGAAGCCGTAGCTATAGTAGCAGGAGCAGAAGGTTCAGTTTTGTTGTGTTGATGTGGCCTTTTGCGGCGATCTGGGAACTGCATGTTAGGATCTTGATGGCATGTGGTGCTCCAACGCCTGCAACTTTATGGTCTGAGGTAATACTGTTTTGTTGA 1083 0.4488 MQCVSSYSLPKNLASVISFWKLEEHRLRFFASQTGFDSFIAIFLFLSSKLVRALIDLAAAYILIPTPLGRLSFGAASSPSDSVTGKRKKMSGRSSRTIYVGNLPGDIRLREVEDLFYKYGPIVDIDLKIPPRPPGYAFVEFEDARDAEDAIHYRDGYNFDGFRLRVEFAHGGRGYSSSVDRYSSYSGSSGSRGVSRRSDYRVLVTGLPPSASWQDLKDHMRKAGDVCFSQVFRERGGMTGIVDYTNYDDMKYAIRKLDDSEFRNAFSRAYIRVREYDRGYSRSPSCDSRRSYSRSPSRSPYISRSRSRSRSRSYSSRSRRFSFVVLMWPFAAIWELHVRILMACGAPTPATLWSEVILFC. 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g06720 360 SMART rrm1_1 97 167 IPR000504 GO:0003723
Seca7g06720 360 SMART rrm1_1 201 270 IPR000504 GO:0003723
Seca7g06720 360 FunFam ASF/SF2-like pre-mRNA splicing factor SRP31 90 199 - -
Seca7g06720 360 PANTHER RNA RECOGNITION MOTIF RRM DOMAIN CONTAINING PROTEIN 88 317 - -
Seca7g06720 360 SUPERFAMILY RNA-binding domain, RBD 94 266 IPR035979 GO:0003676
Seca7g06720 360 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 202 264 IPR000504 GO:0003723
Seca7g06720 360 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 98 165 IPR000504 GO:0003723
Seca7g06720 360 CDD RRM2_SF2_plant_like 200 275 - -
Seca7g06720 360 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 200 278 IPR000504 GO:0003723
Seca7g06720 360 MobiDBLite consensus disorder prediction 279 304 - -
Seca7g06720 360 CDD RRM1_SF2_plant_like 97 167 - -
Seca7g06720 360 Gene3D - 199 277 IPR012677 -
Seca7g06720 360 MobiDBLite consensus disorder prediction 285 304 - -
Seca7g06720 360 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 96 171 IPR000504 GO:0003723
Seca7g06720 360 FunFam serine/arginine-rich splicing factor SR34A-like 200 277 - -
Seca7g06720 360 Gene3D - 77 198 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g06720 Seca-Chr7 169623328 169629996 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g06720 97 169 Eukaryotic Initiation Factors Gene Family AT3G11400 32.895 8.65e-06 45.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g06720 K12890 - gmx:100794282 339.347