Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g06689 ATGAATGCGATGACGAACGACAACAACAACATATCTTCAGACCAAGTAATTGCAGAAATGCTTGAAATGGGTTTTGAGTATTCCAACATTCTTGAAGCCATCAAAGTAGTGGGTCCATCGGTTCCCAGCGCCGTGGAGCATATCTTCAATACTACTAACAACCGTGACCGTGAAACATCCAATACCCAAACCTACAAATTACGTTCACGTAATGGGAATTCTCTCAAAAAACGAACTTTTCCCTCGTCCCTTCAAGCTCCAAAGTCAAGGGTACTCGACCATTATTTCCAATCCATTGATAAAGCCACAAAGAGCAAGAGCAATGACGTTGTTGCTGTTGATGTGGAAGAGCACAAGGAGCCTTCTTTACCTCAAATTGGAGTTGATATTCCCGGTGTCGCTCAAGATTTGGATATTTCATCCGTTTGGGAGCAGAGAGTTAGCTATCTGTTGCAAAAGCATTTTGGTTTTTCATCCTTGAAAAGTTTTCAGAAGGAAGCACTCTCTACATGGGTTGCTCATAAAGACTGTCTTGTCCTGGCTGCAACAGGATCTGGGAAATCTCTGTGCTTTCAGATTCCTGCATTGTTAACTGGGAAAGTGGTGGTTGTGATTTCACCTTTGATAAGCTTGATGCATGATCAATGCTTAAAGCTTACAAGCCTTGGAATCAGTGCTTGCTTTCTTGGCTCTGGGCAACCTGATGATACCGTTGAAGAGAAAGCAATGAAAGGCATGTATAGTATAATTTATGTTTGCCCAGAGACAATCAAGAGATTGATTCAATCACTGCAGAAGCTTGCAGAAAGCCGTGGCATTGCTTTATTTGCAATTGATGAGGCACATTGCATTTCTAAATGGGGTCATGATTTCCGTCCAGCCTACAGCCAACTGTCTGTGTTGAGGGAAAATTTCAGTATTGGCAAGCTAAAATCCCTGAAATTTGATATACCTCTGATGGCCTTGACAGCTACAGCTACAAAGAGAGTTCGAGAAGACATTTTAAAATCGCTATGCATGTCAAAAGAAACAAATGTTGTTCTCACATCATTTTTTCGATCTAACTTACGCTTCATGGTAAAGCATAGTAGAACATCACGGGCTTCTTATGAGAAAGATTTTCATGAATTGATTAAAGTATATGGTAGAGAGCAAAATATTGGTGGAAATAAAGATTTCATGTCAGATGATTCAGATGATGTTTCCAATATCTCTGATGCTAGTAGAAGTTCTGATACAGACAGTAATTCTTCTTATGATGTGGATGACAATCAAGATGACTATGGCGATAAAGATATAAATATAATCCACTCAGGCAATACAGCCCATTTTATAAAGGCAAAAGAATTGTCAATTGAATTACTGGAAAATGACGATGGTGTCTCTCAAAGTAGGGATAACTCTGATGCTACCTGTGGTGAATTTTGCGTACAACCTCCTCCCAAGGAGCTTTTGGATCAAGGACCAACAATCATATATGTAACCACCAGAAAAGAAACACTGAGAATTGCAAAGTATTTATGCAAGTTTGGTGTGAAAGCTGCTGCTTATAATGCAGGGCTGCCCAAGTTGCATCTAAGAAGTGTTCATAAAGAGTTTCATGAAAATAGTATACAGGTTGTTGTTGCGACAGTAGCATTTGGAATGGGGATTGACAAATCAAATGTCAGAAGAATCATCCACTATGGTTGGCCACAGAGTTTGGAAGCCTACTACCAAGAAGCTGGACGGGCTGGTCGAGATGGGAAGTTAGCAGATTGCTTTCTATATGCAAACCTAGCAAGAAAGCCAAGACTTTTGCCAAATCGTAGAAGTGAAGATCTAATAAAACAAGCATATGTCATGTTGTCTGATGGTTTCAGGTTTGCTTCAATGAATACATCTTTATTTGTCTTTTTCTTTTGTTTTATTTTAGCACCAAATCTTAACGTATATTTGCAGATATGGAATGAATACTTCATGTTGTCGAGCAAAGACACTTGTCGAGTACTTTGGAGAGGATTTCAGTCATAA 2013 0.3939 MNAMTNDNNNISSDQVIAEMLEMGFEYSNILEAIKVVGPSVPSAVEHIFNTTNNRDRETSNTQTYKLRSRNGNSLKKRTFPSSLQAPKSRVLDHYFQSIDKATKSKSNDVVAVDVEEHKEPSLPQIGVDIPGVAQDLDISSVWEQRVSYLLQKHFGFSSLKSFQKEALSTWVAHKDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLISLMHDQCLKLTSLGISACFLGSGQPDDTVEEKAMKGMYSIIYVCPETIKRLIQSLQKLAESRGIALFAIDEAHCISKWGHDFRPAYSQLSVLRENFSIGKLKSLKFDIPLMALTATATKRVREDILKSLCMSKETNVVLTSFFRSNLRFMVKHSRTSRASYEKDFHELIKVYGREQNIGGNKDFMSDDSDDVSNISDASRSSDTDSNSSYDVDDNQDDYGDKDINIIHSGNTAHFIKAKELSIELLENDDGVSQSRDNSDATCGEFCVQPPPKELLDQGPTIIYVTTRKETLRIAKYLCKFGVKAAAYNAGLPKLHLRSVHKEFHENSIQVVVATVAFGMGIDKSNVRRIIHYGWPQSLEAYYQEAGRAGRDGKLADCFLYANLARKPRLLPNRRSEDLIKQAYVMLSDGFRFASMNTSLFVFFFCFILAPNLNVYLQIWNEYFMLSSKDTCRVLWRGFQS. 671
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g06689 670 FunFam ATP-dependent DNA helicase 466 591 - -
Seca7g06689 670 PANTHER DNA HELICASE RECQ FAMILY MEMBER 140 661 - -
Seca7g06689 670 SMART ultradead3 156 361 IPR014001 -
Seca7g06689 670 MobiDBLite consensus disorder prediction 389 426 - -
Seca7g06689 670 SMART helicmild6 501 582 IPR001650 -
Seca7g06689 670 NCBIfam RecQ family ATP-dependent DNA helicase 150 378 IPR004589 GO:0004386|GO:0006310
Seca7g06689 670 SUPERFAMILY UBA-like 13 54 IPR009060 GO:0005515
Seca7g06689 670 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 10 51 IPR015940 -
Seca7g06689 670 FunFam ATP-dependent DNA helicase 131 352 - -
Seca7g06689 670 Gene3D - 133 352 IPR027417 -
Seca7g06689 670 Gene3D - 465 618 IPR027417 -
Seca7g06689 670 Pfam Helicase conserved C-terminal domain 485 581 IPR001650 -
Seca7g06689 670 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 168 344 IPR014001 -
Seca7g06689 670 MobiDBLite consensus disorder prediction 400 418 - -
Seca7g06689 670 Pfam DEAD/DEAH box helicase 163 330 IPR011545 GO:0003676|GO:0005524
Seca7g06689 670 CDD DEXHc_RecQ 151 351 - -
Seca7g06689 670 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 480 620 IPR001650 -
Seca7g06689 670 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 199 592 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g06689 Seca-Chr7 169214321 169223035 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g06689 485 582 Eukaryotic Initiation Factors Gene Family AT5G11170 29.592 1.06e-07 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g06689 K10900 - gmx:100793222 835.484