Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g06684 ATGGCGGGAACAACCGAAAACACATCGAAAGAGACCCTACGCGAATACGAAGAAGAAGCCGATGAACAAAGTTTCGAAGAGCTTGGATTGGACGCTCGCCTCGTTCGCGCCTTACTCAAGAAGGGAATCGAGAAATCCACTCCAATTCAGCGCGTCGCGATTCCACTGATTCTGGAAGGTAAGGACGTGGTTGCTCGAGCAAAGACGGGTTCTGGGAAGACCTTCGCATACCTTCTTCCTTTGCTTCAGAAACTGTTTACCGGTAATGTTGATAGGAAGAAGTTAGCACCCAATGCTTTCATTCTTGTTCCAACTCGCGAACTGTGTCAACAGGTGTATGCGGAGGTGTTGTCACTCCTCGATTTATGCAGAGTTCAATTGAAAGTTGTGCAGTTGAACAGCAATATGCTTGCCAATGACTTGCGGGCAGCTTTGGTTGGACCCCCTGATGTTTTGATCTCCACTCCTGCATGCATAGCCAAGTGCTTGTCTGGTGGCATACTTCAGGCGGCATCCATTAATGGTTCTCTTGAAACTCTAGTTCTTGATGAGGCAGATCTTCTATTATCATATGGGTATGAAGATGATATAAAAGCTTTTACACCTCATGTACCCAGGAGTTGCCAGTGTCTTCTTATGTCTGCAACATCAAGTGCTGATGTTGACAAACTAAAGAAGTTGATTCTACACAATCCCTTTATTTTGACTTTGCCTGAAGTGGGAAATCAGAAGGATGATGTCATCCCTAAAAACGTTCAGCAATTCTGGATCTCATGTCCTGCCAGTGATAAGTTGCTCCACATCCTTGCTGTGTTGAAGTTGGAGTTGGTCCAAAAGAAAGTATTGATATTCACTAATACTATAGACATGAGTTTCCGATTGAAACTATTCTTGGAAAAGTTTGGGATAAAGTCTGCTGTTTTAAATGCTGAGTTGCCACAGAACTCTCGTCTTCATATTCTTGAGGAATTCAATGCCGGCCTATTTGATTATCTTATTGCAACAGATGTCAGCCAGGCAAAGGAGAAGGATGAAGTGCCAAAGGAAAGTAATTTTGGATCACGGAAGTCTAGAAAACATTCTAAGCTAAAATTAGATTCTGAATTTGGAGTAGTAAGGGGAATTGATTTTAAAAATGTATACACGGTATGCAAGTCATCTCTTATATTATATCTCTATGACATGTTTATGTCTAATTTGCACCTGTTTGAAATTATTGTTCTGCATATGTTATTCTAG 1239 0.4165 MAGTTENTSKETLREYEEEADEQSFEELGLDARLVRALLKKGIEKSTPIQRVAIPLILEGKDVVARAKTGSGKTFAYLLPLLQKLFTGNVDRKKLAPNAFILVPTRELCQQVYAEVLSLLDLCRVQLKVVQLNSNMLANDLRAALVGPPDVLISTPACIAKCLSGGILQAASINGSLETLVLDEADLLLSYGYEDDIKAFTPHVPRSCQCLLMSATSSADVDKLKKLILHNPFILTLPEVGNQKDDVIPKNVQQFWISCPASDKLLHILAVLKLELVQKKVLIFTNTIDMSFRLKLFLEKFGIKSAVLNAELPQNSRLHILEEFNAGLFDYLIATDVSQAKEKDEVPKESNFGSRKSRKHSKLKLDSEFGVVRGIDFKNVYTVCKSSLILYLYDMFMSNLHLFEIIVLHMLF. 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g06684 412 MobiDBLite consensus disorder prediction 1 21 - -
Seca7g06684 412 Gene3D - 239 398 IPR027417 -
Seca7g06684 412 SMART ultradead3 42 255 IPR014001 -
Seca7g06684 412 Pfam DEAD/DEAH box helicase 47 224 IPR011545 GO:0003676|GO:0005524
Seca7g06684 412 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 16 236 IPR027417 -
Seca7g06684 412 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 54 235 IPR014001 -
Seca7g06684 412 PANTHER RNA HELICASE 17 384 - -
Seca7g06684 412 Gene3D - 2 237 IPR027417 -
Seca7g06684 412 CDD DEADc_DDX56 30 237 - -
Seca7g06684 412 Pfam Helicase conserved C-terminal domain 263 386 IPR001650 -
Seca7g06684 412 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 247 382 IPR027417 -
Seca7g06684 412 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 23 51 IPR014014 GO:0003724
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g06684 Seca-Chr7 169177860 169184194 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g06684 24 337 Eukaryotic Initiation Factors Gene Family AT3G19760 26.752 3.90e-27 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g06684 K14810 - gmx:100800749 642.114