Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g06683 ATGGATCAGGCTCGATCGACCAACGGCGAGGAGAATGTGGGGATTCCAGACGATTTGCGTTGCAAGAGATCAGATGGGAAGCAATGGAGATGCACGGCCATGTCCATGCCCGACAAAACGGTGTGCGAGAAGCACTACATCCAAGCCAAGAAGAGAGCAGCAAATTCCGCCATGAGGGCTAACCTCAAGAAAGCTAAGAGGAAATCGTTGCCACTGGGCGAGTCTGATATTTATTTGGAGAGCAAAAGTGATGATTTTGACACGCCCCTTTGTGCTGCTATCAACAACAACCACTCTTCTTCCTCTGGGAAGAAGTTCTTGGATAAGGTTTCCAAGAACCAGTTTCGTTATACCCCTGAGTCTGAGACTAGAAGGGGTTCTTCAACTCGTCATGCTCCCAGGCCTAGTGATGATTCCCCTGAACGTGTGGATGTGGATGTCCCTCCCTATGAAGAGAATTTGGTCTCCTACGATTCGCCCCCAGCTTCTGGAGTGGATTCAGCAAGGAAAAGGTCGCACAGGAGCTTGGATGCTAATGCCACGACTGAATATTCCGATGGAACCTCGGATTCTTCTCAAGACACTGGTGGCCAGACTTGCCATCAGTGCCGGAGGAATGACAGGGACAGAGTTACTTGGTGCCTTCGGTGTGATAGGAGAGGATACTGTGATAGCTGTATATCAACATGGTACTCAGACATTTCGTTGGATGAAATTCAGAGGATATGTCCTGCATGCCGTGGTATATGTAATTGTAAAATTTGCTTACGTAGTGATAATTCAATAAAGGTTCGGATACGAGAGATACCTGTACTAGATAAGTTACAGTATCTTCACTTGCTGCTCTCGTCAGTGCTTCCTGTGGTAAAGCAGATCCACCGGGAACAGTGCTTTGAAGTTGAACTTGAAAAGAAGTTGCGCGGTGTTGAAATAGATCTCCCGAGGACAAAATTAAATGCAGATGAGCAGATGTGCTGGTACACCTATAACACTTTTCTTAGAATTGGTGATCTTAATTTATGTAGGATACCCATTACTGATTATCATCGACGCTGTCCAAGTTGCTCATATGATTTGTGCATTAATTGTTGTCGAGACCTTCGAGAAGCAACTGTACATCACAATAAAGAACCCCAAACAGAGCAAGCAAAAACTTCTGATCAAAACATATTATTTAAGTTTCCTCATTGGAGATCCAATGACAACGGAAGTATTCCATGCCCCCCTAAGGAGTATGGTGGCTGTGGTTACTCACCATTAAATTTAAGTAGGATTTTCAAAATGAATTGGGTTGCAAAATTGGTGAAAAATGTAGAGGAAATGGTTAGTGGCTGCAGAATTAGTAATGCTGATGGTCCACCAGAAACTGGGTTGAATGCCCTCAGCCTTTGCCAATATTCTCATAGAGAGGATAGTGATGATAATTATCTTTATTGTCCAACATCTGAAGATCTCAAAACAGATGGGATTGGCAATTTTAGAAAGCACTGGAAAAATGGTGAACCCATTATCGTTAAGCAAGTATTTGATAGGTCATCCATGTCAAGTTGGGATCCAATGGTCATATGGCGAGGGATTCGAGAGACATCAGATGAGAAAATGAAAGAAGAAAACAGAATGGTTAAGGCCATAGATTGCTTAGATGGATCCGAGATTGATATTGAGCTTGGACAGTTCATGAAAGGATACTCTGAAGGACATATTCATGAAAATGGTTGGCCACAAATATTGAAGTTGAAGGATTGGCCTTCACCTAGTGCATCTGAAGAATTTCTATTGTACCAAAGACCTGAATTTATCAGCAAAGTGCCTTTACTTCAGTATATTCACTCCAAGTGGGGCCTTCTTAATGTTGCAGCTAAATTGCCTCATTACTCCTTGCAAAATGATGTAGGGCCCAAGATCTATATATCTTATGGGATTAGTGATGAACTTGGTAGAGGAGATTCAGTGACTAATCTCCACTTCAATATGCGTGATATGGTGTACCTTTTGGTCCATACAAGTGAAGCAAAGCTGAAAGACTGGCAGAGAACTAAAATTGAAATGATACAAAAAGCTCATAAGGAATCTGAGGTGAAAGGATCTCGTGGGGATCCACAAATATGTTCCGGAGGGAGTTCGCCTGATTCATCACTTAATACAAAAAATATTGAACTGGATTTGGAATCAAACCAAAATGATTCGATTATGGATCAAGGGTTTGAAATTTATTCTAATGCTGAAGGGAATGTGGCCAAGTGTGAACTTCCATTTAGACAAAATGGAGATGTCTCTGAGAAAACACATCCTGGAGTTCTTTGGGATGTCTTTCGTCGGCAGGACATTCCAAAGGTGACTGAATATTTGAAAATGCATTGGAAGGAATTAGGGAAGTCAGATGATATAGTAAATGAATTTGTTACATGGCCTCTTTATGATGGAGCTATTTTTCTTGACAGACACCATAAAAGAAAGTTGAAGGAAGAATTTGGAGTGGAGCCGTGGTCATTTGAACAGAATTTAGGGGAAGCTATATTTGTTCCTGCTGGTTGCCCTTTCCAAGCAAGGAATGTTCAGTCCACTGTTCAGTTGGGCCTTGATTTCTTATCTCCAGAAAGCCTGGGGGAGGCTGTAAGATTAGCAGGGGAAGTCCGCTGTCTACCTAATGAACATGAAGCTAAGCTTCAAGTATTGGAGGTCGGGAAGATATCTCTTTATGCAGCAAGTTCAGCCATCAAAGAAGTTCAGAAACTTGTACTTGACCCAAAACTTGGTGCAGAGATCGGATATGGAGACCCTAATTTGACTGCAATGGTTTCTGAGAATTATGAGAAGATGGTTAAGCGGAGGCAGATTACCTGTGCTTGA 2850 0.4225 MDQARSTNGEENVGIPDDLRCKRSDGKQWRCTAMSMPDKTVCEKHYIQAKKRAANSAMRANLKKAKRKSLPLGESDIYLESKSDDFDTPLCAAINNNHSSSSGKKFLDKVSKNQFRYTPESETRRGSSTRHAPRPSDDSPERVDVDVPPYEENLVSYDSPPASGVDSARKRSHRSLDANATTEYSDGTSDSSQDTGGQTCHQCRRNDRDRVTWCLRCDRRGYCDSCISTWYSDISLDEIQRICPACRGICNCKICLRSDNSIKVRIREIPVLDKLQYLHLLLSSVLPVVKQIHREQCFEVELEKKLRGVEIDLPRTKLNADEQMCWYTYNTFLRIGDLNLCRIPITDYHRRCPSCSYDLCINCCRDLREATVHHNKEPQTEQAKTSDQNILFKFPHWRSNDNGSIPCPPKEYGGCGYSPLNLSRIFKMNWVAKLVKNVEEMVSGCRISNADGPPETGLNALSLCQYSHREDSDDNYLYCPTSEDLKTDGIGNFRKHWKNGEPIIVKQVFDRSSMSSWDPMVIWRGIRETSDEKMKEENRMVKAIDCLDGSEIDIELGQFMKGYSEGHIHENGWPQILKLKDWPSPSASEEFLLYQRPEFISKVPLLQYIHSKWGLLNVAAKLPHYSLQNDVGPKIYISYGISDELGRGDSVTNLHFNMRDMVYLLVHTSEAKLKDWQRTKIEMIQKAHKESEVKGSRGDPQICSGGSSPDSSLNTKNIELDLESNQNDSIMDQGFEIYSNAEGNVAKCELPFRQNGDVSEKTHPGVLWDVFRRQDIPKVTEYLKMHWKELGKSDDIVNEFVTWPLYDGAIFLDRHHKRKLKEEFGVEPWSFEQNLGEAIFVPAGCPFQARNVQSTVQLGLDFLSPESLGEAVRLAGEVRCLPNEHEAKLQVLEVGKISLYAASSAIKEVQKLVLDPKLGAEIGYGDPNLTAMVSENYEKMVKRRQITCA. 950
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g06683 949 MobiDBLite consensus disorder prediction 687 712 - -
Seca7g06683 949 Pfam WRC 16 56 IPR014977 -
Seca7g06683 949 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 17 913 IPR045109 GO:0032454|GO:0033169
Seca7g06683 949 MobiDBLite consensus disorder prediction 123 148 - -
Seca7g06683 949 MobiDBLite consensus disorder prediction 178 200 - -
Seca7g06683 949 ProSiteProfiles WRC domain profile. 15 59 IPR014977 -
Seca7g06683 949 MobiDBLite consensus disorder prediction 114 202 - -
Seca7g06683 949 SUPERFAMILY Clavaminate synthase-like 494 883 - -
Seca7g06683 949 Gene3D Cupin 474 888 - -
Seca7g06683 949 ProSiteProfiles Zinc finger RING-type profile. 200 247 IPR001841 -
Seca7g06683 949 Pfam Zinc-finger domain of monoamine-oxidase A repressor R1 195 260 IPR018866 -
Seca7g06683 949 ProSiteProfiles JmjC domain profile. 611 879 IPR003347 -
Seca7g06683 949 Pfam JmjC domain, hydroxylase 766 858 IPR003347 -
Seca7g06683 949 SMART cupin_9 592 879 IPR003347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g06683 Seca-Chr7 169168381 169175143 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g06683 16 56 GRF Transcription Factor Family AT3G13960 46.341 3.23e-06 48.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Seca7g06683 JmjC 1.9e-06 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g06683 K15601 - gmx:100801287 1571.6