Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g06681 ATGTCAAACATCACTAGTTGTGATAGTGGGAGTTTCTCTACAGAGAATACCAGAGAAGATGCAATTAAACAGCAACCTCCAGAGATACTTGGTCAGTTCCATAGTCCACATTCTCTCACTTCAACAACAACAACAACAAATAATAGCAATATTTCCAACACAAATTTACAACCACCAGCACCTCTTAAGAAGAAAAGAAGCCTCCCAGGAAATCCAGATCCAAGTGCTGAAGTTATAGCTCTATCACCAACCACTCTGTTGGCTACAAACAGGTTCGTATGTGAAATCTGCAACAAAGGATTTCAAAGAGACCAAAACCTTCAATTGCACCGGCGTGGACACAACTTGCCATGGAAGCTTAAACAGAGAACCACCACAGAAATCCGAAAGAGGGTTTATGTTTGTCCAGAACCTTCATGTGTCCACCACAACCCAGCAAGAGCACTAGGTGATCTTACTGGCATTAAAAAGCACTTTTGCAGAAAGCACGGTGAGAAGAAGTGGAAATGTGATAAATGCTCCAAGAAATACGCTGTTCAATCTGACTGGAAAGCACACTCGAAAATCTGTGGTACAAGGGAATACAAATGTGACTGTGGAACCATCTTTTCCAGAAGAGACAGCTTCATTACACACAGAGCTTTCTGTGACGCATTGGCTGAGGAGAACAATAAAGCCAATGAAGGACAATTATCAAAGATGGGTTCAAATTTGCAATGTCAACCAAATATCCCAAACCTTGTTTCCTCATTACCAATCAATAGTACCAATCCCAACCCACAAATTGGTGGGACAACAGAATTCAACCATTCTGATCACAAGCATCCATTATCACTGCCTCATGATCTCATGCCAGTGCCTCCTGCAAAACCCTTCATCAACAACAACATTTCAGGAACTGTTTTCACTCGAAGCCTCTCATCCACCTCTTCTCCCTCTCTTCAACTGAGTTCAAACATCTTCGAGGAAAACGGGCTTCATTTATCTGCAGGGTCACCGCACATGTCAGCAACTGCATTGCTGCAAAAAGCTGCACAAATGGGTGCAACAGTGAGTAGTAACAGTGAAATAAGTTTTGCCACAAACATGGCACCGCCACCATTTGGTATGGTGCAACAGCAACAGCCAAATGGACATGCTTTCATGAACAACCACTACATGCAGAATGGTCAACAGAGTATTTCTCCTGCTCAGTTCAGTTTCAATGCAAGTGGGATTGGTGGTGCAATGAATGGTGTGGATATGTTTAATGCTATATTGGATCAGAGTAAGGCGTTATCGAAGATCATAGAACAGAACAGTCAAAGCAATGTTGGAGGTCCAACAAGTAGTGTTATTAACATTGGTGGAAGTAAAGGAAGTGGGGATGTAATGACTTTGGATTTGTTGGGGATAGGAGGAGGTGGTGGTGGTGGGAATGTGCATGCAAATTTCTATGGTGGTACCCAACAGGGGGAAACTGGTGCAGCAGATGGGGTATGGAGAAATTGGTCCACAAAGAATGCAGGGTTTGAATCGTTTTCAGCTACAAGTAGCATTTGA 1542 0.4287 MSNITSCDSGSFSTENTREDAIKQQPPEILGQFHSPHSLTSTTTTTNNSNISNTNLQPPAPLKKKRSLPGNPDPSAEVIALSPTTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTTTEIRKRVYVCPEPSCVHHNPARALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVQSDWKAHSKICGTREYKCDCGTIFSRRDSFITHRAFCDALAEENNKANEGQLSKMGSNLQCQPNIPNLVSSLPINSTNPNPQIGGTTEFNHSDHKHPLSLPHDLMPVPPAKPFINNNISGTVFTRSLSSTSSPSLQLSSNIFEENGLHLSAGSPHMSATALLQKAAQMGATVSSNSEISFATNMAPPPFGMVQQQQPNGHAFMNNHYMQNGQQSISPAQFSFNASGIGGAMNGVDMFNAILDQSKALSKIIEQNSQSNVGGPTSSVINIGGSKGSGDVMTLDLLGIGGGGGGGNVHANFYGGTQQGETGAADGVWRNWSTKNAGFESFSATSSI. 514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g06681 513 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 44 476 IPR031140 -
Seca7g06681 513 FunFam protein indeterminate-domain 5, chloroplastic-like 146 225 - -
Seca7g06681 513 MobiDBLite consensus disorder prediction 1 20 - -
Seca7g06681 513 SUPERFAMILY beta-beta-alpha zinc fingers 91 188 IPR036236 -
Seca7g06681 513 MobiDBLite consensus disorder prediction 34 60 - -
Seca7g06681 513 Gene3D Classic Zinc Finger 147 227 - -
Seca7g06681 513 MobiDBLite consensus disorder prediction 1 73 - -
Seca7g06681 513 FunFam protein indeterminate-domain 12-like 71 139 - -
Seca7g06681 513 SMART c2h2final6 168 188 IPR013087 -
Seca7g06681 513 SMART c2h2final6 133 163 IPR013087 -
Seca7g06681 513 SMART c2h2final6 92 114 IPR013087 -
Seca7g06681 513 ProSiteProfiles Zinc finger C2H2 type domain profile. 92 114 IPR013087 -
Seca7g06681 513 ProSitePatterns Zinc finger C2H2 type domain signature. 94 114 IPR013087 -
Seca7g06681 513 Gene3D Classic Zinc Finger 71 137 - -
Seca7g06681 513 Pfam Zinc finger, C2H2 type 92 114 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g06681 Seca-Chr7 169163374 169166400 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g06681 40 355 IDZ Gene Family AT3G50700 55.977 9.95e-119 355
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Seca7g06681 zf-C2H2 0.0052 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g06681 - - gmx:100785295 792.727