Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g06679 ATGGAAGGTGAGCAAGATAGGGCTTTACCCATTGCAAATGTGGGTAGAATAATGAAGCAAATCCTTCCTCCAAGTGCAAAGATCTCGAAAGAAAGCAAGCAACTAATGCAAGAATGTGTAACAGAGTTCATAAGTTTTGTGACGGGTGAAGCATCTGACAAGTGTCACAAGGAGAATCGCAAGACCGTTAATGGGGATGACATCTGTTGGGCTCTTAGTTCCTTAGGGTTTGACAACTTTGCTGAAGCCATTGGAAGGTACTTGCATAAATACAGGCAAGCTGAAAGGGAGAAATTGAAGAATCACAATGAAGAAGGAGCAACCAAACGTCAGAAGCAAACTCAAATTAATTAA 354 0.4124 MEGEQDRALPIANVGRIMKQILPPSAKISKESKQLMQECVTEFISFVTGEASDKCHKENRKTVNGDDICWALSSLGFDNFAEAIGRYLHKYRQAEREKLKNHNEEGATKRQKQTQIN. 118
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g06679 117 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 4 109 IPR027113 GO:0001228|GO:0006355|GO:0016602
Seca7g06679 117 Gene3D Histone, subunit A 1 117 IPR009072 GO:0046982
Seca7g06679 117 MobiDBLite consensus disorder prediction 97 117 - -
Seca7g06679 117 FunFam Nuclear transcription factor Y subunit B-6 1 114 - -
Seca7g06679 117 SUPERFAMILY Histone-fold 5 109 IPR009072 GO:0046982
Seca7g06679 117 ProSitePatterns NF-YB/HAP3 subunit signature. 39 55 IPR003956 GO:0005634|GO:0006355|GO:0043565
Seca7g06679 117 PRINTS CCAAT-binding transcription factor subunit A signature 36 54 - -
Seca7g06679 117 PRINTS CCAAT-binding transcription factor subunit A signature 55 73 - -
Seca7g06679 117 PRINTS CCAAT-binding transcription factor subunit A signature 74 92 - -
Seca7g06679 117 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 8 72 IPR003958 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g06679 Seca-Chr7 169128073 169128426 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g06679 4 114 CCAAT-HAP3 Transcription Factor Family AT1G09030 67.568 2.47e-55 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Seca7g06679 CBFD_NFYB_HMF 3.9e-26 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g06679 K08065 - gmx:100791116 193.356