Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g06672 ATGGCACCAACAAGGAAATCTACTAGTGTGAATAAGCGGTTTTCAAATTCAAATGACTTTTCTCCCAAGAAAGAGAAAGATGAAGTTAACTCAAATAAAAACAAGCAACGAAAGAAAAGGTTGTCTGATAAATTGGGACCTCAGTGGAGTAAGGAGGAACTAGAACGATTTTATGAAGCATATAGGAAGTATGGGAAAGAGTGGAAAAAGGTGGCTACCGTTTTACGTGATAGATCCGTTGAAATGGTGGAAGCTCTATACAATATGAATCGGGCATACCTTTCTCTGCCAGAGGGGACAGCTTCTGTTGTTGGCCTCATAGCAATGATGACAGATCATCATAATGTCCTGGAAGGGAGTGATAGTGAAAGGGAGAGCAATGATGCACCAGGATCTCGAAAACCTGTGAAACGAAAGCGTGAAAAAGTTCAACTAAGTGTTTCAAAAGATCCTGTTCAGTCTCAGTCAATTGCTTCCCCCGATGGTTGCCTCTCTCTACTAAAGAAGAGACGCATTGATGGTATCCAGCCTCGGGCTGTTGGGAAAAGGACACCCCGTGTCCCAGTTTACTACTCTTATAAGAAGGATGATAGGGAAAATTATATTTCACCTAATAAAAGAAGCCTGAAGTCAACCATTGATGCTAATGATGATGAAGTTGTAAATGTGGCTTTGGCATTAACCAAAGCTGCACAGAGAGGGGGCTCTCCCCTAGTTTGTCAGACACCATACAGAAGAGCAGAGCAACAGTCTTCTCCTGTACCGAGTGGGGAAAAAATGCGCCAAATGTCAGAGACAGCTCGTGCCAAGTTTCATGATGTCTCTGTTGATGAAGAGTTTGTGGAAGGCAGTATAGAAAGCAGGGAAACTGAAAATGGAGAATATGCCAGAGATACTAGTTCCTTGATGGACATGGAAGGCATGGGCACTGTTGAAGTTCTTCAGAAGGGGGGGAAATTTTACAGAAAGAAAGAGAGAGTGGGAAATGTTGCAAACGATAAGTTTGATGATGGTGGGGAAGCATGTAGTGGCATCGAAGGAGTTAGGTTTAGTTCTTTGAAGGAAAAGGTTGATATTGAGGCTAATAATGAAAAACTTGAGCAATTCTCTCTAAAACATCAGAGGAAAAGAAGCAAGAAACTCTTCTTTGGAGGTAAGTCTGTCACTAGACATATCTGTGCAAATGAAATTCCTGCCTTGAATGCCTTGCAAACTTTGGCTGATCTGTCTCTAATGATGCCAACATCTAAAGTAGAATCTGAGTCATCTGTCCAGTTGAAGGGAGAAAGAATGGCTGTTGATAAAGATGATAAGTCTGCCTTACCTGAAGAAACATCAACAAGTCATAACAGATATGAACATAAACTGTGCGTCGTGCCTGGAGTTGAGGCTTCAGCCTCCAAAAAATCTAAACTCGGAAAGGAATCAGGAATTGATATTAATGCTCTCTCTGAATCAAAAGAGAAGCTTCCCCTTGTTGATAGAACATGGAAAAGAAAGCAAAAGTCCATGATTTCAAAGGCTGTAGATGATGAGAGCAAACCAGTGATTAAAGGAAAACACACTGATCAGGTTTTTACCCTGCCAAAACAATTGAAGACAGTCAAATCATCAGAGAGTTCCCTGTGTAGTGATCAGAAAGATTTGACAGCATCAACTACAGAAGTTCCACTTTTGAGTGAAGTTAGTTTACCAACTAACCAAGGAAGTAGACGAAAGAGGATTATTCAGAGAACATCCATGCCTAAAGAGAAGTCTTCTGAGAACATATTGAAAAGTCAACCTAACAAGTACTCTATTACCCTAAGGGGAAAGCTTTCTAGTTTCCTGTCATCTTATATGGTTCGCAGATGGTTTACTTTTGAATGGTTTTATAGTGCAATAGATTATCCATGGTTTGCCAAAAGGGAATTCATGGAATACTTAAATCATGTTGGACTAGGGAATATCCCAAGGCTAACTCGTGTTGAGTGGAGTGTCATAAAAAGTTCCCTTGGCAAACCTCGCAGGTTTTCTGAACAATTTCTAAATGAAGAAAGACAAAAAGTTGAACAGTATCTGGAATCAGTGAGGAAACATTATACTGAACTGTGGACTGGTATTAGAGATGGACTTCCAACAGATTTAGCTAGACCATTATGCGTTGGACAACGAGTAATTGCCATTCACCCAAAAACAAGAGAGATTCATGATGGTAGTGTGCTTACAGTTGACCATGACAAATGCAGGATTCAGTTTGACCATCCTGAATTAGGCGTTGAATTTGTCATGGATATTGATTGCATGCCTTTGAATCCATTAGATAATATGCCAGACGCTCTGAGGGGGCAGATTAATGGAAATTCAAGTTTTGGGGGATGCGAAATGCGTGCTTCACCTCAAAAGGGGGATGTTAACTATGCAATTGTCCAGGCCAAGGTTGCTACCATTGATAACCTCTGTCCACAAGCAGCTTGTGCTCAACCGTGTAAGGTTACACACAATCAAGCTAAGGAAGCTGATATACATGCACTTTCTGAACTGAAGCGTGCTATGGATAAAAAGGAGACACTGTTAATGGAGCTTCGAAGTGCAAATAATGGCATACTGGAAAACCAAAATGGCATAGAATGCTTAAAAACTTCCGAGGCGTTCAGGAAGCATTTCGCCACGGTACTTGTAGAGCTAAAGGAAGCCAGTGGACAGGTTTCTGATGCTATGCTTCAATTGAGGCAACGCAATACTTACACAGGAAACTCTCTGCCACCATGGATGAAGCCTCAATCAAATTTTAATGTTCATGATGACCTTCCCGGTGTGTTGGATAGTTCTCTAGCACAGGAGTTTGGATCAACTGTCATTGAAATTATTAAAGGATCCAGGCTAAGGGCACATGCAATGGTGGAAGCTGCATTTCAGTCATTGTCTTTGACAAAAGAAGGTGAAGATGCTTTCACAAGGATTGGGCAGGCCCTGGATTGTATTGATTATCAGCGGTCGGCCTCCAAGTCGAGGTTACCTGTGATCAGGTCCCAAGACCAAGTGAATGGCAGTTTTTATTATCATAATCAGTCAACTAGCTGTGCATCAGAGGCTTTACTCAATGATGCATCTGGTCCAAAACTGCATAATGATTCCAACAAAGTTAATGCTAAAATTCCATCAGAGCTCATCACTTCATGCGTTGCTACATTAATCATGATACAGACTTGTTCTGAACGGCAATACCCTCCAGCTGATGTGGCCCAGATATTAGATTCTGCCGTTACCAGCCTGCATCCGTGCTGTCCTCAAAACCTTCCTGTTTATAGAGAAATTCAAATGTGCATGGGAAGAATTAAGACCCAGATTTTAGCTCTCATCCCTACTTGA 3351 0.4139 MAPTRKSTSVNKRFSNSNDFSPKKEKDEVNSNKNKQRKKRLSDKLGPQWSKEELERFYEAYRKYGKEWKKVATVLRDRSVEMVEALYNMNRAYLSLPEGTASVVGLIAMMTDHHNVLEGSDSERESNDAPGSRKPVKRKREKVQLSVSKDPVQSQSIASPDGCLSLLKKRRIDGIQPRAVGKRTPRVPVYYSYKKDDRENYISPNKRSLKSTIDANDDEVVNVALALTKAAQRGGSPLVCQTPYRRAEQQSSPVPSGEKMRQMSETARAKFHDVSVDEEFVEGSIESRETENGEYARDTSSLMDMEGMGTVEVLQKGGKFYRKKERVGNVANDKFDDGGEACSGIEGVRFSSLKEKVDIEANNEKLEQFSLKHQRKRSKKLFFGGKSVTRHICANEIPALNALQTLADLSLMMPTSKVESESSVQLKGERMAVDKDDKSALPEETSTSHNRYEHKLCVVPGVEASASKKSKLGKESGIDINALSESKEKLPLVDRTWKRKQKSMISKAVDDESKPVIKGKHTDQVFTLPKQLKTVKSSESSLCSDQKDLTASTTEVPLLSEVSLPTNQGSRRKRIIQRTSMPKEKSSENILKSQPNKYSITLRGKLSSFLSSYMVRRWFTFEWFYSAIDYPWFAKREFMEYLNHVGLGNIPRLTRVEWSVIKSSLGKPRRFSEQFLNEERQKVEQYLESVRKHYTELWTGIRDGLPTDLARPLCVGQRVIAIHPKTREIHDGSVLTVDHDKCRIQFDHPELGVEFVMDIDCMPLNPLDNMPDALRGQINGNSSFGGCEMRASPQKGDVNYAIVQAKVATIDNLCPQAACAQPCKVTHNQAKEADIHALSELKRAMDKKETLLMELRSANNGILENQNGIECLKTSEAFRKHFATVLVELKEASGQVSDAMLQLRQRNTYTGNSLPPWMKPQSNFNVHDDLPGVLDSSLAQEFGSTVIEIIKGSRLRAHAMVEAAFQSLSLTKEGEDAFTRIGQALDCIDYQRSASKSRLPVIRSQDQVNGSFYYHNQSTSCASEALLNDASGPKLHNDSNKVNAKIPSELITSCVATLIMIQTCSERQYPPADVAQILDSAVTSLHPCCPQNLPVYREIQMCMGRIKTQILALIPT. 1117
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g06672 1116 MobiDBLite consensus disorder prediction 1 17 - -
Seca7g06672 1116 MobiDBLite consensus disorder prediction 420 447 - -
Seca7g06672 1116 Pfam DIRP 623 724 IPR033471 -
Seca7g06672 1116 SMART DIRP_2 624 725 IPR033471 -
Seca7g06672 1116 ProSiteProfiles SANT domain profile. 44 81 IPR017884 -
Seca7g06672 1116 CDD SANT 49 83 IPR001005 -
Seca7g06672 1116 Gene3D - 2 101 - -
Seca7g06672 1116 MobiDBLite consensus disorder prediction 1 46 - -
Seca7g06672 1116 MobiDBLite consensus disorder prediction 428 447 - -
Seca7g06672 1116 SMART sant 45 93 IPR001005 -
Seca7g06672 1116 MobiDBLite consensus disorder prediction 18 46 - -
Seca7g06672 1116 SUPERFAMILY Homeodomain-like 44 92 IPR009057 -
Seca7g06672 1116 PANTHER LIN-9 1 1116 IPR010561 GO:0006351|GO:0017053
Seca7g06672 1116 MobiDBLite consensus disorder prediction 117 146 - -
Seca7g06672 1116 Coils Coil 838 858 - -
Seca7g06672 1116 MobiDBLite consensus disorder prediction 117 159 - -
Seca7g06672 1116 Pfam Myb-like DNA-binding domain 48 83 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g06672 Seca-Chr7 169041656 169055386 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Seca7g06672 DIRP 4.5e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g06672 - - gmx:100789533 1652.49