Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g06640 ATGGATCATCATGGGCATGGCCAGAATCCATCTATGGGGGTTGTTGGTAGTGGACCACAGCTGACATATGGTTCTAATCCATACCAACCAAACCATATGACTGGTTCACCTGGAATGGTTGTTTCATCAGGTGGGACTATTCAATCCACTGGCCAACCAGCTGGAGCTCAGCTGGGACAACATCAACTTGCTTATCAGCATATTCATCAGCAACAACAGCAGCAACTTCAGCAACAGCTCCAAACCTTTTGGGCAAATCAATATCAAGAAATTGAGAAAGTAACTGATTTCAAGAACCACGGCCTTCCCTTGGCAAGGATCAAGAAGATTATGAAGGCTGATGAGGATGTTAGAATGATCTCAGCTGAGGCACCCGTCGTGTTTGCAAGGGCATGTGAAATGTTCATATTAGAGTTAACCTTGCGATCTTGGAATCACACTGAAGAAAACAAAAGGAGGACACTTCAGAAAAATGATATTGCAGCAGCCATCACAAGAACTGATATCTTTGATTTCTTGGTTGACATTGTGCCTCGGGAGGACTTGAAAGATGAAGTGCTTGCATCAATACCAAGAGGAACAATGCCTGTTGCAGGGCCTGCTGATGCACTTCCTTATTGCTATATGCCACCTCAACATGCACAGCAAGTTGGATCTGCTGGTGTCATGATGCCTAAGCCTATGATGGACCCAAATATATATGCTCAGCAGCCTCATCCCTACATGGCACAACAAATGTGGCCACAACCACCAGAGCAACAACAATCATCTCCAGATCATTAG 783 0.4483 MDHHGHGQNPSMGVVGSGPQLTYGSNPYQPNHMTGSPGMVVSSGGTIQSTGQPAGAQLGQHQLAYQHIHQQQQQQLQQQLQTFWANQYQEIEKVTDFKNHGLPLARIKKIMKADEDVRMISAEAPVVFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLVDIVPREDLKDEVLASIPRGTMPVAGPADALPYCYMPPQHAQQVGSAGVMMPKPMMDPNIYAQQPHPYMAQQMWPQPPEQQQSSPDH. 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g06640 260 Gene3D Histone, subunit A 63 179 IPR009072 GO:0046982
Seca7g06640 260 MobiDBLite consensus disorder prediction 1 37 - -
Seca7g06640 260 Pfam Core histone H2A/H2B/H3/H4 62 164 IPR007125 GO:0003677
Seca7g06640 260 MobiDBLite consensus disorder prediction 13 37 - -
Seca7g06640 260 SUPERFAMILY Histone-fold 69 173 IPR009072 GO:0046982
Seca7g06640 260 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 64 215 - -
Seca7g06640 260 FunFam Nuclear transcription factor Y subunit gamma 66 179 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g06640 Seca-Chr7 168832425 168834174 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g06640 1 247 CCAAT-HAP5 Transcription Factor Family AT1G08970 61.290 4.62e-88 259
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Seca7g06640 CBFD_NFYB_HMF 6.6e-18 CL0012