LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca7g06616	ATGAACAACCCACATACCTTCTACCTAAATGGGGGCACCACCCCCATCTGCTTCCTCCTTCTCATTCTCTCCCACGGCATTCTCCTCGCCGGAGCACAAACTACGAACACTCAAGACGATTCCTATTACAACCGCGTCAGCCCCTCCATGGCCATCATAATCGTCATACTCATAGCCGCTCTCTTCCTCATGGGCTTCTTCTCTATCTACATCCGCCGCTGCGCCGATTCCCCTTCCAGCAGTGTCCGCTACATCACCGGCGCCGCCGGACGCTCCCGCCGTGCACAGCGTGGCCTCGACCGCGCCGTCATCGACACGTTCCCCACTTTCGAATATTCCGCAGTGAAGATTCACAAGATTGGAAAAGGCGCTCTGGAATGCGCGGTGTGTTTAAACGAATTCGAGGAGACCGAAACGCTGCGTTTGATCCCGAAATGCGACCACGTGTTCCATCCAGAGTGCATCGATGAGTGGCTTGCTTCCCACACCACTTGCCCTGTTTGCCGAGCCAACCTCGTTCCCCAACCTGGCGATTCAGTTCACGGAATCCCGATTCTGAACGACGATCCGCAAGAAGATATTGAGGCACAGAACGACGCCGTTGAACCGGCTCAGGACCAGCAAAATGCGGACGCTGCTCCTCGAGACTCGAATAAAGAACCGGAATTGATGAGCTTGAACATGACGCTGAACCGGAACCGCACCAAGGGGTCGCGGTCGAGCCGGACGCGAAGGTTCCCGCGGTCTCACTCGACCGGTCATTCGTTGGTCCAACCGGGTGAGGACACTGAACGGTTCACTTTGAGACTTCCTGTGGAAGTGAGGAAGCAGATACTACTGAACCCGGAATTGCATCGGGCTAGAAGCTTGGTTGTGTTGCCTAGAGAAAGTAGTTCACGGCGGGGATATAGAGCCGGTGGAGAGGGAAGTAGCAGAGGGAGGAACTCAAGGCGATTGGACAGGGGTTTCAAATCAGACCGGTGGGTTTTCACGATGGCGCCGCCCTTCCTAGTTAGAGCGTCGTCGATTAGGTCGCCAAGGGTAGCTAATAGCGTCGGGGAAGGCACCTCCGCTCCTCCACCGCCGCCGGCGGTGGAAGTGAGCTCTGCTCGCCCTGCGGTTTAA	1125	0.5653	MNNPHTFYLNGGTTPICFLLLILSHGILLAGAQTTNTQDDSYYNRVSPSMAIIIVILIAALFLMGFFSIYIRRCADSPSSSVRYITGAAGRSRRAQRGLDRAVIDTFPTFEYSAVKIHKIGKGALECAVCLNEFEETETLRLIPKCDHVFHPECIDEWLASHTTCPVCRANLVPQPGDSVHGIPILNDDPQEDIEAQNDAVEPAQDQQNADAAPRDSNKEPELMSLNMTLNRNRTKGSRSSRTRRFPRSHSTGHSLVQPGEDTERFTLRLPVEVRKQILLNPELHRARSLVVLPRESSSRRGYRAGGEGSSRGRNSRRLDRGFKSDRWVFTMAPPFLVRASSIRSPRVANSVGEGTSAPPPPPAVEVSSARPAV.	375

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca7g06616	374	CDD	RING-H2_EL5-like	126	169	-	-
	Seca7g06616	374	ProSiteProfiles	Zinc finger RING-type profile.	127	169	IPR001841	-
	Seca7g06616	374	MobiDBLite	consensus disorder prediction	294	319	-	-
	Seca7g06616	374	MobiDBLite	consensus disorder prediction	222	236	-	-
	Seca7g06616	374	Pfam	Ring finger domain	126	169	IPR001841	-
	Seca7g06616	374	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	87	174	IPR013083	-
	Seca7g06616	374	SMART	ring_2	127	168	IPR001841	-
	Seca7g06616	374	PANTHER	RING FINGER DOMAIN-CONTAINING	36	181	-	-
	Seca7g06616	374	MobiDBLite	consensus disorder prediction	347	374	-	-
	Seca7g06616	374	FunFam	E3 ubiquitin-protein ligase ATL6	88	175	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca7g06616	Seca-Chr7	168097894	168099018	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca7g06616	12	357	Rapid Response to Elicitors	AT3G05200	44.764	2.98e-94	285

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca7g06616	K10664		-	gmx:100810865	464.151

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