Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g06616 ATGAACAACCCACATACCTTCTACCTAAATGGGGGCACCACCCCCATCTGCTTCCTCCTTCTCATTCTCTCCCACGGCATTCTCCTCGCCGGAGCACAAACTACGAACACTCAAGACGATTCCTATTACAACCGCGTCAGCCCCTCCATGGCCATCATAATCGTCATACTCATAGCCGCTCTCTTCCTCATGGGCTTCTTCTCTATCTACATCCGCCGCTGCGCCGATTCCCCTTCCAGCAGTGTCCGCTACATCACCGGCGCCGCCGGACGCTCCCGCCGTGCACAGCGTGGCCTCGACCGCGCCGTCATCGACACGTTCCCCACTTTCGAATATTCCGCAGTGAAGATTCACAAGATTGGAAAAGGCGCTCTGGAATGCGCGGTGTGTTTAAACGAATTCGAGGAGACCGAAACGCTGCGTTTGATCCCGAAATGCGACCACGTGTTCCATCCAGAGTGCATCGATGAGTGGCTTGCTTCCCACACCACTTGCCCTGTTTGCCGAGCCAACCTCGTTCCCCAACCTGGCGATTCAGTTCACGGAATCCCGATTCTGAACGACGATCCGCAAGAAGATATTGAGGCACAGAACGACGCCGTTGAACCGGCTCAGGACCAGCAAAATGCGGACGCTGCTCCTCGAGACTCGAATAAAGAACCGGAATTGATGAGCTTGAACATGACGCTGAACCGGAACCGCACCAAGGGGTCGCGGTCGAGCCGGACGCGAAGGTTCCCGCGGTCTCACTCGACCGGTCATTCGTTGGTCCAACCGGGTGAGGACACTGAACGGTTCACTTTGAGACTTCCTGTGGAAGTGAGGAAGCAGATACTACTGAACCCGGAATTGCATCGGGCTAGAAGCTTGGTTGTGTTGCCTAGAGAAAGTAGTTCACGGCGGGGATATAGAGCCGGTGGAGAGGGAAGTAGCAGAGGGAGGAACTCAAGGCGATTGGACAGGGGTTTCAAATCAGACCGGTGGGTTTTCACGATGGCGCCGCCCTTCCTAGTTAGAGCGTCGTCGATTAGGTCGCCAAGGGTAGCTAATAGCGTCGGGGAAGGCACCTCCGCTCCTCCACCGCCGCCGGCGGTGGAAGTGAGCTCTGCTCGCCCTGCGGTTTAA 1125 0.5653 MNNPHTFYLNGGTTPICFLLLILSHGILLAGAQTTNTQDDSYYNRVSPSMAIIIVILIAALFLMGFFSIYIRRCADSPSSSVRYITGAAGRSRRAQRGLDRAVIDTFPTFEYSAVKIHKIGKGALECAVCLNEFEETETLRLIPKCDHVFHPECIDEWLASHTTCPVCRANLVPQPGDSVHGIPILNDDPQEDIEAQNDAVEPAQDQQNADAAPRDSNKEPELMSLNMTLNRNRTKGSRSSRTRRFPRSHSTGHSLVQPGEDTERFTLRLPVEVRKQILLNPELHRARSLVVLPRESSSRRGYRAGGEGSSRGRNSRRLDRGFKSDRWVFTMAPPFLVRASSIRSPRVANSVGEGTSAPPPPPAVEVSSARPAV. 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g06616 374 CDD RING-H2_EL5-like 126 169 - -
Seca7g06616 374 ProSiteProfiles Zinc finger RING-type profile. 127 169 IPR001841 -
Seca7g06616 374 MobiDBLite consensus disorder prediction 294 319 - -
Seca7g06616 374 MobiDBLite consensus disorder prediction 222 236 - -
Seca7g06616 374 Pfam Ring finger domain 126 169 IPR001841 -
Seca7g06616 374 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 87 174 IPR013083 -
Seca7g06616 374 SMART ring_2 127 168 IPR001841 -
Seca7g06616 374 PANTHER RING FINGER DOMAIN-CONTAINING 36 181 - -
Seca7g06616 374 MobiDBLite consensus disorder prediction 347 374 - -
Seca7g06616 374 FunFam E3 ubiquitin-protein ligase ATL6 88 175 - -
Seca7g06616 374 MobiDBLite consensus disorder prediction 199 262 - -
Seca7g06616 374 SUPERFAMILY RING/U-box 118 176 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g06616 Seca-Chr7 168097894 168099018 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g06616 12 357 Rapid Response to Elicitors AT3G05200 44.764 2.98e-94 285
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g06616 K10664 - gmx:100810865 464.151