Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g06613 ATGTGTTTGCCTGAGGGAGAGAGGGATAGAGAGAGAGCCATGGCACTTGAAGCAGTGGCATATCCTCAAACACAAGACCCATTTGGCTATGGACTCAAAGACTTCTACAACTGCAACTTGCTAGCTGGAAATTGGAGCTATGAAGACCTCAACCTTGAAAAAGAAGAAGATCAAGGATCTATCACTTTTCTAGAGAACCAAACAGAGAATTATCCTTATGGAGATTGGAATACCTCATCAATGTTACAACCCCACTTCAATAATGAACTTCAAGACCCCAACAACACACAAAACTTAGATACCCCAACTCGTCCTAAGAGGCGCAGAGCCAAAAGCAGAAAGAATAAGGAAGAAATTGAGAATCAAAGAATGACTCACATTGCTGTGGAGAGAAATAGAAGAAAACAGATGAATGAGTATCTTTCTGTTCTTCGGACTCTAATGCCAGACTCTTATATCCAAAGGGGTGATCAAGCTTCTATAATTGGAGGGGCTATTAACTTTGTTAAAGAGCTTGAACAGAGGCTGCACTTTCTTGGTGCTCAGAAAGAAGTAGAAGGGAAATCTGATGTTGCTGGTGGTGCAGCACCAAACATGCCCTTTTCTGAGTTTTTCTCCTTTCCCCAATATTCAACAAATGCTAGTAGCAGTGATAATTCTGGAGCCATTGGTGAACATGTGGGTGGGGTTCAATCTGGCATTGCTGATATAGAAGTGACAATGGTGGAAAGTCATGCAAATCTCAAAATAAGATCTAAGAAGAGGCCAAAACAGCTCTTGAAAATGGTCACTGGTTTGCATAGCATGCGCCTCACAATTTTGCACCTAAATGTTACCACCACTGGTGAAACTGTCCTCTACTCTCTCAGTGTTAAGGTAGAAGATGATTGCAAGTTGGGATCAGTGGATGATATAGCTGCAGCTGTGTACCAGATGCTGGATAGGATTCAACAAGAGGCAATGCTGAATTAA 972 0.4187 MCLPEGERDRERAMALEAVAYPQTQDPFGYGLKDFYNCNLLAGNWSYEDLNLEKEEDQGSITFLENQTENYPYGDWNTSSMLQPHFNNELQDPNNTQNLDTPTRPKRRRAKSRKNKEEIENQRMTHIAVERNRRKQMNEYLSVLRTLMPDSYIQRGDQASIIGGAINFVKELEQRLHFLGAQKEVEGKSDVAGGAAPNMPFSEFFSFPQYSTNASSSDNSGAIGEHVGGVQSGIADIEVTMVESHANLKIRSKKRPKQLLKMVTGLHSMRLTILHLNVTTTGETVLYSLSVKVEDDCKLGSVDDIAAAVYQMLDRIQQEAMLN. 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g06613 323 PANTHER MAX DIMERIZATION, MAD 81 320 - -
Seca7g06613 323 Gene3D - 106 186 IPR036638 GO:0046983
Seca7g06613 323 Coils Coil 47 67 - -
Seca7g06613 323 SMART finulus 127 178 IPR011598 GO:0046983
Seca7g06613 323 Pfam Helix-loop-helix DNA-binding domain 122 173 IPR011598 GO:0046983
Seca7g06613 323 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 121 184 IPR036638 GO:0046983
Seca7g06613 323 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 121 172 IPR011598 GO:0046983
Seca7g06613 323 MobiDBLite consensus disorder prediction 82 118 - -
Seca7g06613 323 MobiDBLite consensus disorder prediction 82 101 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g06613 Seca-Chr7 168043540 168045340 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g06613 14 293 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G72210 47.604 1.03e-74 230
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca7g06613 HLH 6.8e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g06613 - - pvu:PHAVU_007G181900g 478.018