Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g06599 ATGGCGAATGACTGTATCGATCATCATTGTTTATGGGACCATACCAAAAGCTTTGCTCATAAAGCAAAGAAGGTCTCAATGGCAGAAGCTTTAAATCTTAAGCCCAAAAAGGGACTAGGATCTCTGTTTTCTTCCTCTGCTTCTGCCCAAGACTTGAGACATTTGGACCTGGAAAAGGAGAAAGATGATGAGACAACTCCAAGAGGGGTTTTAGAGGCATGTGTTAGAGAATTTGACTCTCATAAGCCACCTGAATCAGAAACCAGTAGTTCAAGTTCCAGTACACGGTCTCACTGGAGCAAGTTTTTCAAATTGTGGAAAAAAAGTTCATTTAAGCGCCTAGCTTCCATCCCTGCTAATATCAGTGTACCAAAGATACCAAAGTGGAAAAGCAGAAGCACTAGAGAAAATCCTGCAAGAAGTAAACTCTACAACTTCAGGTCTTCTTTGGTGACTTTCAGCCTCTCTGACCTTAGAAATGCAACCAACAATTTCAGCAAAGAAAATTTAATTGGAAGAGGTGGTTTTGCTGAGGTTTACAAGGGTGTTCTCCAAGATGGGCAATTAATAGCTGTGAAGAAAATGACTAAAGGGACCACAGATGAGAAGACAGCAGGATTTCTATCTGAGCTAGGTGTTAGTGCTCATGTTGACCATCCTAATACTGCCAAAATTATTGGTTGTGGTGTAGAAGGAGAAATGCACCTTGTCTTTGAACTATCTCCACTGGGAAGTTTAGGATCTCTTCTTCATGGTTCAGATAAAAACAAGTTAGATTGGAGTAAAAGATACAAAATTTCTCTAGGAATAGCTGATGGTCTCCTCTATCTACATGAGAATTGTCACAGGCGAATCATTCATAGAGATATTAAGTCAGAGAATATTCTGCTCACGGACAATTTTGAGCCACAGATTTGTGATTTTGGGCTAGCAAAGTGGTTACCAGAACAATGGACTCACCATAATGTGTCAAAATTTGAAGGCACATTTGGGTACTTTGCTCCTGAATATTGCATGCATGGTATAGTAGATGAGAAAACTGATGTTTATTCCTTTGGGGTCCTACTTTTGGAGATCATAACTGGGCGTCCTGCTTTGAGTAATTTGCAGCAGAGTGTTGTGATATGGGCAAAACCTTTGCTTGACACTCATAATATCAAGGACCTTGTTGATCCTTCTCTTGGTGATAATTATGACCGAGAACAGATGCGTCATGTTGTTTTGACTGCATCACTGTGTGTTGAACAGTCTCCTATCTCACGCCCCCGCATGAGTCAGGTGCTTTGGGCTTGCTTTGACAGGCTAGAGCTCGGTCCGTCTTCTTTCAAACATATCCTCTTACTTGGTTATTCCAATGGCTTTCAAGTCCTTGATGTGGAAGATGCCTCTAATATCAGGGAACTTGTTTCGAAACGTGATGATCCAGTTTCATTTTTACAGATGCAGCCTGTCCCTGCAAATTTGGAGGGTTGTGAAGGATTTAGAGCATCACATCCTTTGCTCTTGGTTGTTGCATGTGATAAATCGAAGATCCCTGGTACAATGCAAAATGTCAAAGATGGGCTTAACGAAGCTCAAGCTACAGCTGTTAGATTTTACTCACTAAGGTCCCATACTTATGTTCATGCTTTGAGATTCCGTTCAACTGTCTACATGGTTAGATGCAGTCCCCAAATAGTGGCTGTGGGTCTTGCTACTCAAATATACTGTTTTGATGCTCTTACTCTTGAGAATAAGTTCAGTGTTCTCACTTACCCTGTGCCTCAGTTGGGAGGCCAGGGAATGGTTGGGGTTAATATTGGTTATGGTCCTATGTCTGTAGGGCCACGGTGGTTAGCTTATGCCTCCAACAACCCATTGTTGTCAAACACTGGTTGCTTAAGTCCTCAGAGTCTTACTCCTCCTGCTGTCAGCCCATCAACATCACCGAGCAGTGGAAACCTGGTAGCCCGATATGCCATGGAGTCTAGCAAGCACTTGGCTGCTGGGCTGTCTAAATACTATCAAGATCTTATACCTGATGGCTCCAGTTCTCCTGTATCATCAAATTCAAGCTGGAAAGTTAGTCGATTTACATCAAATTCGGCAGAAACAGATGCAGCTGGGGTGGTTGTTGTCAAGGATTTTATTTCTAGAGCTGTTGTGGCACAATTTAGGGCCCATACTAGTCCAATATCTGCTCTATGTTTTGACCCTAGTGGGACACTTCTAGTTACTGCCTCAATTCATGGTAACAACATCAATATATTCCGAATTATGCCTTCCTGCTCAAGAAATGGATCAGGTTCTCACAGCAGTGATTCAAGATGTTCTCATGTGCACCTTTACAAGCTCCACCGTGGCATGACTTCTGCTGTAATACAAGATATTTGTTTTAGCCATTACAGTCAGTGGATTGCGATCATTTCCTCCAAGGGAACTTGTCATATTTTTGTTCTTGCCCCTTTTGGTGGTGAGACAGTTCTTAGGATACACAATCAAGACACAGAAGGGCCTGTTCTTTTGCCAAATTTTCCTCTACCGTGGTGGTTCACTCCACATTTCACAGTAAACCAGCAGCAGCTTTGCCTGGCACCCCCACCTCCTGTTGTTCTTTCTGTGGTTAGCAGAATAAAAAATATTAACGTCGGATGGCTCAATTCAGTTAGTAATGCTGCATCTTCTGCAGCAGGGAAAGTCTCAGTTCCATCTGGTGCTGTTTCTGCTGTCTTTCATAGTTCCGTTCCTTGTTATTCACACAGCTCATACTCAAACATTCATGCTATGGAACACTTACTGGTTTATACCCCTTCTGGTCATTTAATTCAATATAGACTACTACCGCCATTAGTGGCAGACCCAAGTGAAACTGCTTTGAGAACAGTCCCAGCTCCTTCAGCACAGATACAAGAAGACGATTTGCGAGTGAAGGTTGAACCTGTTCAATGGTGGGATGCCTGTAGGAGATCTGATTGGCCAGAAAGAGAGATAAATATATTGGGGAATACTCTTGGTGGACTGGAAGCTGCAGAAATGGTCTTGGATAGTTCAGATCATGAAGATAATAGTGTTGGGAACAATAATTCTATGAGACATAATAAGCAATGTCACTTCTCAAATGCAGAGGTACATATAAGCTCTGGGAGGATACCAATTTGGCAGCAGTCAGAGGTCTCTTTCTTTGTGATGAATCCTTTGGAGGCTGGAGAGTGGAATTTATGTGAACTTCCTACCAATGGAGAGATTGAAATAGAAAATATTCCTGTTAATGAGGTTGAAATAAGACAGAAGGATTTGTTGCCCTTCGTTGATCATTTCCATAGAATTCAGTCTACTTGGGGTGACAGAGGTTTTGTTATGGGAAGATGCTCTACCTCTTCATCTGATTCACATGTGACTGAAGAGAAGTTATCTGAAGATACTGCAATTTCCCATTCAAAGTTGATGGTACCTGGCTTAGCTGAAAAAACAGGTGTTGGTGCCTCAAATTTTGCTGACAGTATAACTACAAATGTTAAATCATCACAACATCCAAAAGCCAGTGACAGTTTCAATTCAAGTTTTATTGGCTGTGATGTGAACATGAATGTTACTTGTGAGGAGTCAATACGTGATTCACCGGACTATGAGCAATTTTTTCAAGAGGGTTATTGTAAAGCATCAGTTGATTGTCATGAATCAACAGAAGTTGCTACTGATATGGACTGTAGCAGTCCCTGTGGCAGGGAAAAATCTGATGAAGATGGTGATAATGATGACATGCTCGGTGATGTATTTGACTTCTCTGAGGAAGGTTGA 3777 0.4178 MANDCIDHHCLWDHTKSFAHKAKKVSMAEALNLKPKKGLGSLFSSSASAQDLRHLDLEKEKDDETTPRGVLEACVREFDSHKPPESETSSSSSSTRSHWSKFFKLWKKSSFKRLASIPANISVPKIPKWKSRSTRENPARSKLYNFRSSLVTFSLSDLRNATNNFSKENLIGRGGFAEVYKGVLQDGQLIAVKKMTKGTTDEKTAGFLSELGVSAHVDHPNTAKIIGCGVEGEMHLVFELSPLGSLGSLLHGSDKNKLDWSKRYKISLGIADGLLYLHENCHRRIIHRDIKSENILLTDNFEPQICDFGLAKWLPEQWTHHNVSKFEGTFGYFAPEYCMHGIVDEKTDVYSFGVLLLEIITGRPALSNLQQSVVIWAKPLLDTHNIKDLVDPSLGDNYDREQMRHVVLTASLCVEQSPISRPRMSQVLWACFDRLELGPSSFKHILLLGYSNGFQVLDVEDASNIRELVSKRDDPVSFLQMQPVPANLEGCEGFRASHPLLLVVACDKSKIPGTMQNVKDGLNEAQATAVRFYSLRSHTYVHALRFRSTVYMVRCSPQIVAVGLATQIYCFDALTLENKFSVLTYPVPQLGGQGMVGVNIGYGPMSVGPRWLAYASNNPLLSNTGCLSPQSLTPPAVSPSTSPSSGNLVARYAMESSKHLAAGLSKYYQDLIPDGSSSPVSSNSSWKVSRFTSNSAETDAAGVVVVKDFISRAVVAQFRAHTSPISALCFDPSGTLLVTASIHGNNINIFRIMPSCSRNGSGSHSSDSRCSHVHLYKLHRGMTSAVIQDICFSHYSQWIAIISSKGTCHIFVLAPFGGETVLRIHNQDTEGPVLLPNFPLPWWFTPHFTVNQQQLCLAPPPPVVLSVVSRIKNINVGWLNSVSNAASSAAGKVSVPSGAVSAVFHSSVPCYSHSSYSNIHAMEHLLVYTPSGHLIQYRLLPPLVADPSETALRTVPAPSAQIQEDDLRVKVEPVQWWDACRRSDWPEREINILGNTLGGLEAAEMVLDSSDHEDNSVGNNNSMRHNKQCHFSNAEVHISSGRIPIWQQSEVSFFVMNPLEAGEWNLCELPTNGEIEIENIPVNEVEIRQKDLLPFVDHFHRIQSTWGDRGFVMGRCSTSSSDSHVTEEKLSEDTAISHSKLMVPGLAEKTGVGASNFADSITTNVKSSQHPKASDSFNSSFIGCDVNMNVTCEESIRDSPDYEQFFQEGYCKASVDCHESTEVATDMDCSSPCGREKSDEDGDNDDMLGDVFDFSEEG. 1259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g06599 1258 Gene3D Phosphorylase Kinase; domain 1 127 239 - -
Seca7g06599 1258 Pfam WD domain, G-beta repeat 715 741 IPR001680 GO:0005515
Seca7g06599 1258 SMART WD40_4 769 812 IPR001680 GO:0005515
Seca7g06599 1258 SMART WD40_4 711 751 IPR001680 GO:0005515
Seca7g06599 1258 SUPERFAMILY Protein kinase-like (PK-like) 142 431 IPR011009 -
Seca7g06599 1258 Pfam Breast carcinoma amplified sequence 3 860 1094 IPR022175 -
Seca7g06599 1258 SUPERFAMILY WD40 repeat-like 443 811 IPR036322 GO:0005515
Seca7g06599 1258 FunFam Receptor-like cytosolic serine/threonine-protein kinase RBK1 141 240 - -
Seca7g06599 1258 Gene3D - 662 833 IPR015943 GO:0005515
Seca7g06599 1258 FunFam Autophagy-related protein 18h 411 829 - -
Seca7g06599 1258 MobiDBLite consensus disorder prediction 1225 1258 - -
Seca7g06599 1258 Pfam Protein tyrosine and serine/threonine kinase 168 376 IPR001245 GO:0004672|GO:0006468
Seca7g06599 1258 ProSiteProfiles Protein kinase domain profile. 165 447 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca7g06599 1258 PANTHER BREAST CARCINOMA AMPLIFIED SEQUENCE 3 424 1241 IPR045142 GO:0006914
Seca7g06599 1258 ProSitePatterns Protein kinases ATP-binding region signature. 171 194 IPR017441 GO:0005524
Seca7g06599 1258 Gene3D Transferase(Phosphotransferase) domain 1 242 436 - -
Seca7g06599 1258 FunFam receptor-like cytosolic serine/threonine-protein kinase RBK2 242 434 - -
Seca7g06599 1258 ProSitePatterns Serine/Threonine protein kinases active-site signature. 285 297 IPR008271 GO:0004672|GO:0006468
Seca7g06599 1258 MobiDBLite consensus disorder prediction 1243 1258 - -
Seca7g06599 1258 SMART serkin_6 165 432 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g06599 Seca-Chr7 167960288 167973845 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g06599 133 432 Trihelix Transcription Factor Family AT1G68690 43.087 1.24e-65 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Seca7g06599 BCAS3 1.4e-68 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g06599 - - gmx:112998147 1379.77