LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca7g06595	ATGGAGTGCAACAAGGATGAGGCGCTGAGGGCTAGGCAAATTGCTGAAAGTAGAATGCAAAGAGGTGAATTTGTAGAGGCACTTAAGTTTGCTATGAAGGCCAAAGCTCTGTATCCTGACATTGAAAACATTGCTCAGATACTCACGGTTTGTGAGGTTCACAATGCTGCAATGAACAAACTCTCTGGGTGTCTCATGGACTGGTATGGAATTCTTCAGACTGAAGGATTGGCAGATGAAGCAACCATCAAGAAACAGTACAGGAAGCTTGCACTATTACTTCATCCAGATAAAAATAAATTTGCTGGTGCAGAAGCTGCTTTCAAGTTGATTGGGGAAGCCAATAGGGACATTAAGTTTAAAGGCTCTGTGAGAACTGCGGCACCTAAGACCTCACCCCCTCACTCAAATGGGAATGAATTTGCAGCAGCTAAGCATGATGGAAATGCAACAAATTATCAGAAAAATTCCTATTCAAGCCCCACTTGTAGGAATGCCCATCAGCAAGCTCAACAGCAGACTTTATGGACATGTTGCCATTATTGTAATGCAAAGTACCAATACTGCACAAATGTTGTAAATAAATCCATATTCTGTCGAAATTGTTTGAAACCTTTTGTAGCTCATGTTTTAAGGTACAACGATGTCGGTGTCCCACCAGAACCATATACCCAGAAGCATGATCCGCCAAAACCAGCCTCAGAAAGTAAAGATGGAAAACCCCGTGGTGGAGAATTTACTGTGCCGTCACATCCTATACCTATGAAAAAATGTGCTACTGGAGTTGTCGGGAAACATACAAGCGAAAATAATACAGATGGCTGTGTTCCTGCGTCCAAAGCCATGGAGTCACAAGCCACAATAAATGTTGGAAGTAAGAGAGTAAGTCAGTCAACACCAGATTCAGGAGAAAGTTTTAATGCTGGAAATGGTGTTCACATGAAAGATGCTGGAAATGGTGATCACAAGAAAGATGCTGGAAATGGTGATCACATGAAAGATGCCAATGTTCGAGGAAATGATGTTGATCCTTCAGGATTTAATGCCAGGAGATCTTCCAGGAAAAGGCAACATGTTTCTTACGTGGAAACCGCTGAAGATGATGATTTTGAGCTTCCTTCCAAAATGGCACGACAAAACGGATCATTAAACACCAATGAAGTTGAGAAAAATAACGTGCCTGCTAGTGGTGGGTCGTCCAAGAACAATAATCCAGCTAGTTATACTGCTGGTGTGGTTGATCAGGATGGAGAGATGAGAAATAAAGCAAGTAGTCCACCTGAAGAAACATGTTTGAAGAATAAAAGCCAATTTGAGCAATCTCATGTTCAAGGAGAGAAGGTATCGGAGTCAGATCTTGATCGTGGAAAATCAAAAGTGGACCACTGTGCTTCATTAAATTCAAAGGCCTCCTCTGGTCCAGATATCATTGTTTGTCCTGATACAGATTTCAATGATTTTGAGAAGGATAAGGTGGATGATTGCTTTGCTGTTAATCAATTATGGGCAATTTATGATTCTACTGATGCTATGCCAAGATTTTATGCACTTATCAGGAAAGTGTCCTCCACTTTCAAGTTGAAGATTACTTGGTTGGAACCTGATCCAGATGACCAAGGTGAGATTGATTGGCGTGATGCAGATTTGCCTATTGCTTGCGGTAAGTTCAAACTTGGTCATTCTCATAAAATTACAAATCGTGCTATGTTCTCTCATCAAATGCAGTGCATACAAGGAAGTGGCAATGGTTCTTATCTGATATATCCTAAGAAGGGAGAAACTTGGGCAATTTTCAGAAATTGGGATATCAAACGGAGTTCTAATCCAGGAAATTATTTGATGTGTGATTTTGAATATGTAGAAATCCTATCAGATTTTGCTGAGAATGTTGGCATTGAAGTTGCTTACCTGGGCAAAGTGAACGGGTTCATTAGCCTCTTTCATAAAACTGAGAAGAATGGAGTGTTCATATTTTGTGTTCTACCTAATGAGCTATACAGGTTCTCACATCGAATTCCTTCATACAAGATGACTGGTAATGAAAGGGAAGGTGTTCCAAGAGGATCTTTTGAACTTGATCCTGCTGCTTTGCCAAATAACTTGTTTGAAGCTGGTGGTTCTGGTGATGTGAAGATGGTGAATGAAATGTTAAACACTGGAGTGGAGCAAGCGGTGGCTGGCTAA	2184	0.4084	MECNKDEALRARQIAESRMQRGEFVEALKFAMKAKALYPDIENIAQILTVCEVHNAAMNKLSGCLMDWYGILQTEGLADEATIKKQYRKLALLLHPDKNKFAGAEAAFKLIGEANRDIKFKGSVRTAAPKTSPPHSNGNEFAAAKHDGNATNYQKNSYSSPTCRNAHQQAQQQTLWTCCHYCNAKYQYCTNVVNKSIFCRNCLKPFVAHVLRYNDVGVPPEPYTQKHDPPKPASESKDGKPRGGEFTVPSHPIPMKKCATGVVGKHTSENNTDGCVPASKAMESQATINVGSKRVSQSTPDSGESFNAGNGVHMKDAGNGDHKKDAGNGDHMKDANVRGNDVDPSGFNARRSSRKRQHVSYVETAEDDDFELPSKMARQNGSLNTNEVEKNNVPASGGSSKNNNPASYTAGVVDQDGEMRNKASSPPEETCLKNKSQFEQSHVQGEKVSESDLDRGKSKVDHCASLNSKASSGPDIIVCPDTDFNDFEKDKVDDCFAVNQLWAIYDSTDAMPRFYALIRKVSSTFKLKITWLEPDPDDQGEIDWRDADLPIACGKFKLGHSHKITNRAMFSHQMQCIQGSGNGSYLIYPKKGETWAIFRNWDIKRSSNPGNYLMCDFEYVEILSDFAENVGIEVAYLGKVNGFISLFHKTEKNGVFIFCVLPNELYRFSHRIPSYKMTGNEREGVPRGSFELDPAALPNNLFEAGGSGDVKMVNEMLNTGVEQAVAG.	728

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca7g06595	727	MobiDBLite	consensus disorder prediction	290	306	-	-
	Seca7g06595	727	CDD	DnaJ	67	114	IPR001623	-
	Seca7g06595	727	MobiDBLite	consensus disorder prediction	316	338	-	-
	Seca7g06595	727	Gene3D	DnaJ domain	49	121	IPR036869	-
	Seca7g06595	727	SMART	dnaj_3	66	123	IPR001623	-
	Seca7g06595	727	Pfam	Domain of unknown function (DUF3444)	476	681	IPR024593	-
	Seca7g06595	727	SUPERFAMILY	Chaperone J-domain	66	116	IPR036869	-
	Seca7g06595	727	PRINTS	DnaJ domain signature	87	102	IPR001623	-
	Seca7g06595	727	PRINTS	DnaJ domain signature	69	87	IPR001623	-
	Seca7g06595	727	PRINTS	DnaJ domain signature	103	123	IPR001623	-
	Seca7g06595	727	MobiDBLite	consensus disorder prediction	220	253	-	-
	Seca7g06595	727	Pfam	DnaJ domain	67	115	IPR001623	-
	Seca7g06595	727	MobiDBLite	consensus disorder prediction	228	244	-	-
	Seca7g06595	727	MobiDBLite	consensus disorder prediction	356	374	-	-
	Seca7g06595	727	MobiDBLite	consensus disorder prediction	377	410	-	-
	Seca7g06595	727	PANTHER	DNAJ HEAT SHOCK AMINO-TERMINAL DOMAIN PROTEIN-RELATED	1	704	-	-
	Seca7g06595	727	ProSiteProfiles	dnaJ domain profile.	67	116	IPR001623	-
	Seca7g06595	727	MobiDBLite	consensus disorder prediction	290	456	-	-
	Seca7g06595	727	MobiDBLite	consensus disorder prediction	427	444	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca7g06595	Seca-Chr7	167902240	167904456	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca7g06595	4	208	SUVH1 or 3-interacting DNAJ domain-containing protein superfamily	AT2G01710	32.227	8.31e-20	90.1

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca7g06595	-		-	aprc:113873604	909.827