Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g06575 ATGGGTCGTGCAAGAGTAACTTTGAAGCACATCCAAAATGAGAGAGCTCGCAAAATAGCTTTCTTGCAGAGAAGAAAAGGACTAATGAAAAAAGTATCCGATTTTTCTACCATGTGTGGAGCTAATGCATGCTTGATAATGTATGGTGATAGTAGTGGTGGACCAATGACTTGGCCGGAAGACCTCACAAAAGTACACTCCATCCTTAGAATGTATGAGACTCAAAAGAATGAGAAACCTCTTAAGACATTTGATCTCCAAGACTTTTTTGACAATAGGAAGGACATGGTGGAAACTGAGATATCCAAAGTGAAGAAAGAGATTATCAGTGTCAAGTATCCAACTTGGAATCCAAATTTCAATAACCTAGGAGAGGAGGAGCAGAGGATGTTCATTGCTATGTTGGATGATAAGATTCAAGCTTGTAATCAAAGGATTAACATGTTGAAGAACAAGCAACAGCACAGTGAAGAAGCCAACTCTAGTTTCATGCAAAACATGGCTAACATACAAAACAAGGCTAAAGAGATTGTTAGCTCTTCAGGTCCAAGCCAACTCAATTTCATGCAGAACGTCTCTCAAAGCCAACTTCAAATTATGGCTCACATGCAAAACAAGGCTAAAAAGATTGTTGGCTCCTCAGGTCCAAGCCAACTCAATTTAATGCAGAACATCTCTCAAAGCCAACTTCAAATCCCTGCTCCTGTGAAGGCACTTAATGATAATAATGAGATGGTGGATTTCACTAATCAAGTTGGTGTGCCTCTTAATTCAACAAACCAGCTTGTTGAGTCTGTTGATTGGGCTAATCCACTGAGTGAGCATGTGGATTGGACTAGTCAACTCGCTGAGTCTGATCTTTGGGCTAATTACTTTGATGATCTTTTGGGGTTACCGGGGTGGGCCACTCAACTTGATGATCCAGTTTTGCATAATATTCCTTTTCAGTGTCATAACGAGCGACAAGGAGCAGCTTTACTTACCTTGCCACCACCACTGGATGGACACATGAATCAGAAGCCATAA 1026 0.4084 MGRARVTLKHIQNERARKIAFLQRRKGLMKKVSDFSTMCGANACLIMYGDSSGGPMTWPEDLTKVHSILRMYETQKNEKPLKTFDLQDFFDNRKDMVETEISKVKKEIISVKYPTWNPNFNNLGEEEQRMFIAMLDDKIQACNQRINMLKNKQQHSEEANSSFMQNMANIQNKAKEIVSSSGPSQLNFMQNVSQSQLQIMAHMQNKAKKIVGSSGPSQLNLMQNISQSQLQIPAPVKALNDNNEMVDFTNQVGVPLNSTNQLVESVDWANPLSEHVDWTSQLAESDLWANYFDDLLGLPGWATQLDDPVLHNIPFQCHNERQGAALLTLPPPLDGHMNQKP. 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g06575 341 Gene3D - 13 96 IPR036879 GO:0003677|GO:0046983
Seca7g06575 341 PANTHER MADS BOX PROTEIN 3 146 - -
Seca7g06575 341 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Seca7g06575 341 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Seca7g06575 341 CDD MADS_SRF_like 2 75 IPR033897 GO:0000981|GO:0000987|GO:0045944
Seca7g06575 341 Coils Coil 132 152 - -
Seca7g06575 341 ProSiteProfiles MADS-box domain profile. 1 52 IPR002100 GO:0003677|GO:0046983
Seca7g06575 341 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Seca7g06575 341 SUPERFAMILY SRF-like 1 76 IPR036879 GO:0003677|GO:0046983
Seca7g06575 341 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 58 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g06575 Seca-Chr7 167597763 167598788 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g06575 1 145 Type I MADS-box Gene Family AT5G55690 33.113 7.88e-23 94.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Seca7g06575 SRF-TF 1.7e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g06575 - - gmx:106799207 258.07