LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca7g06571	ATGCTTTCGCCATTGGTTTCTTGGATCCTGCCATCCTCATCCTCTTCCTCCTCATCAGAAGAACAAGAAGAAGAAGAAAGCCTTGACATTAACACCGACGAATCAGACTATGAAAACGACAATGTCGTCGATGAAGACCAAAAGAACAACGTGCAAGATGACGAAAACGACCATTATCTCAGTTCATGCGATGTCGATGACGACAACATTCCCGTTGCGCTCGCCGTTACCGACGCCTCCCCCGCCGTGACGGTGGCATTCCCTGCCACCGACGATGACAGAAACTCCGCCGCCGCTACTGCCGTTGCCACCAGTATAGTAGGACGCTCGAAACGACAACGCAGTAGCACCAAGTATTCTGGTGGCGTGAGACAGTATCAGAGGCTATGGACGAAACAAGACGAGATGGAACTGTTGAAGGGATACCTCGATTACATCAAGCAGCAAGGAAGAACCACCTCTCTCCAAAGCGACGTAGCTTCGTTGTACGATCACGTGATGCCCAAACTCAACGTGGGTTTCAACAGGAACCAGCTTGTTGAGAAGCTGCGTAGGCTAAAGAGAAAGCACAAGGTGACTTTGGACAAAGGCAAGGAGGTTCAGGTTCCTTTCAAGAGCCCCCAGGAGCAGGCCATTTTCGAAATTTCTCACAAGATTTGGGGCAATGACGTTGACCATGATGAAGCTTTGGATGATGATGAGTCAAGACCCGTTCCTGAAAGTTGTGACCTTGTTGAGGTGAAGATGGAACAAGTTCACAATTTTGATGAAATAGACAAAAGGGTGCCAAAGCGGTTGCGGTTTATCACAGATGATGTGAACACAACAAATGAACAGAACAATGGTCATGCTACAACTAGTATACAGGGCTTCATTGAGGACACCATGAGGTCCTGTTTGTCACCATTGCTGAAGGAGCTGTTGGATGGTGCTCAGGAAGGGCCACTTGGCGGGTCGATGGTGCGGCCATTATGCATCGGGGAAGTGGGCGATGAGGAATGGAAAAAGAGGAGAATTGTGGAACTGGAGGTGTATTTGAATCGGTTGGAGTTGTTGCAGGAACAGATCAAAGCTAGATTGGAGGAGTTGCGCTCTAGCTGA	1101	0.4886	MLSPLVSWILPSSSSSSSSEEQEEEESLDINTDESDYENDNVVDEDQKNNVQDDENDHYLSSCDVDDDNIPVALAVTDASPAVTVAFPATDDDRNSAAATAVATSIVGRSKRQRSSTKYSGGVRQYQRLWTKQDEMELLKGYLDYIKQQGRTTSLQSDVASLYDHVMPKLNVGFNRNQLVEKLRRLKRKHKVTLDKGKEVQVPFKSPQEQAIFEISHKIWGNDVDHDEALDDDESRPVPESCDLVEVKMEQVHNFDEIDKRVPKRLRFITDDVNTTNEQNNGHATTSIQGFIEDTMRSCLSPLLKELLDGAQEGPLGGSMVRPLCIGEVGDEEWKKRRIVELEVYLNRLELLQEQIKARLEELRSS.	367

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca7g06571	366	PANTHER	BNAANNG10740D PROTEIN-RELATED	12	362	IPR007592	GO:0006355
	Seca7g06571	366	Coils	Coil	176	196	-	-
	Seca7g06571	366	Coils	Coil	342	366	-	-
	Seca7g06571	366	MobiDBLite	consensus disorder prediction	42	57	-	-
	Seca7g06571	366	MobiDBLite	consensus disorder prediction	1	18	-	-
	Seca7g06571	366	MobiDBLite	consensus disorder prediction	19	41	-	-
	Seca7g06571	366	Pfam	Protein of unknown function, DUF573	127	221	IPR007592	GO:0006355
	Seca7g06571	366	MobiDBLite	consensus disorder prediction	1	57	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca7g06571	Seca-Chr7	167562495	167563595	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca7g06571	70	365	GeBP Transcription Factor Family	AT5G28040	31.854	1.46e-40	146

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	GeBP	Seca7g06571		DUF573	1.6e-24	CL0123

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca7g06571	-		-	gmx:102662842	418.698