Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g06557 ATGTTTGATGGAGTCCCAGAGCAGTTCCACCAATTCATAACTCCAAGAACCTCACTACCACTTCACTTACCTTTCCCTCTCCATCATGCCTCTGCCACCCCCAATACAACAACCTTCCCTGCTTTTGATCCTTATAACCCTTCTTCTCATCCTCAATTGCCACTCCAACCCACCAATCTCTTGCACCCATTACACCCTGCTTCCACTCACAAACATGAAGAAGAGAAGGAAGAAAATACCAACACAGTCCCAATGAACTTTGAAATTGATCAAAGAGATCAAAGGCGTCATCAATTGCCACAACTCATTGATCCCAGCTGGACTAATGATGAAGTTCTTGCTCTATTGAGGATCAGATCTAGCATGGAGAGTTGGTTCCCAGATTTCACTTGGGAACATGTTTCAAGGAAGCTAGCAGAGGTTGGATATAAGAGGAGTGCAGAGAAGTGCAAGGAGAAATTTGAAGAAGAAAGTAGATATTTCAACAACATTAATTACCCCAAGAGTACTACTACTTCTAATAATAATAATTATCGGTTTGTTAGTGAGCTTGAAGAGCTTTATCAAGGTGGCAGTGATCATACTGAGGGACAAGACAAGATGGACCATCAAGAGGATTCAAGAAATGATACAAGAGAAAAGGAGAAGAGTAATGAAGAGGTGGAAAATTTAACAAAGGAGAAGAAGAGGAAGAGGGTGGATAAGTTTGAGGTGTTCAAGGGTTTTTGTGAGAGCATTGTCCACAAGATGATGGCTCAACAAGAAGAAATGCATAACAAGCTGATTGAAGATATGTTGAGAAGAGATGAAGAGAAGTTTACAAGAGAGGAAGCTTGGAAGAAGCAAGAGATGGATAAAATGAACAAGGAGCTTGAGATGATGGCACATGAACAAGCTATTGCTGGTGATAGACAAGCCAACATAATTGAATTCTTGAAGAATTTCTCAGCAATAAGTCCTCCCCTTCTTTCAACTCATGAAAGCAGCACCTTATTTGGAGAAGACAAACTCAAGGTAACAACAACAAAAACAAATGGTTCAACTTCTTCAAACCCAAATAATCCCCTCACTTCTTCTTCTTCCCCATTACAATCACAAAACCCTAATCCTCCTTCTACTATCATTCAAAACAATGTTGATCCAGCAGAAAACCCTAGCTCAAGTACTCTTTCTCAAGACACATTATTACAACTTCCTCCTTCTTCTTCCACTTCAGCTCCTATTCCAATCAACCCTAGTTTATCTCCTTCACTTGAGACAAATTCAGTGACCAATAACAGAATCACCACCACTGATCATCAGAAAGATGATGTTGGGAGAAGATGGCCAAAAGATGAAGTGTTGGCACTGATAAATCTCAGGTGCACTAGTCTGAACAACAACAATGAGGAGAAGGAAGGGAATAATAATAACAACAAGGCTCCACTGTGGGAGAGAATCTCACAAGGGATGTTGGAGTTGGGATACAAGAGGAGTGCAAAGAGATGCAAAGAAAAATGGGAGAACATAAACAAGTACTTTAGAAAAACCAAGGATGGTAATAAGAAGAGGTCCCTTGATTCAAGGACTTGTCCCTACTTTCATCAACTCAGCAATCTGTATAATCAAGGAAAGCTTGTTGTGCAAACTGAGAGGCCTGAAATTAGTCACATGAATAATAATAATAGTAATAATAATAATAATAATTATCCAGCAGAGCAAGTGCTTCAAGATCAAACACAACCAGTGGGGTCTGGTGGAGATTTCACTATGCAGCAGCAGCAGAAGGAGGAGGAGGTTGATCATCATCATGGAGGTGAGAAAAATTTGATGCAAGTACCTGCTGCTTCTTTGGATTTTGATCAGTTTTAA 1851 0.4003 MFDGVPEQFHQFITPRTSLPLHLPFPLHHASATPNTTTFPAFDPYNPSSHPQLPLQPTNLLHPLHPASTHKHEEEKEENTNTVPMNFEIDQRDQRRHQLPQLIDPSWTNDEVLALLRIRSSMESWFPDFTWEHVSRKLAEVGYKRSAEKCKEKFEEESRYFNNINYPKSTTTSNNNNYRFVSELEELYQGGSDHTEGQDKMDHQEDSRNDTREKEKSNEEVENLTKEKKRKRVDKFEVFKGFCESIVHKMMAQQEEMHNKLIEDMLRRDEEKFTREEAWKKQEMDKMNKELEMMAHEQAIAGDRQANIIEFLKNFSAISPPLLSTHESSTLFGEDKLKVTTTKTNGSTSSNPNNPLTSSSSPLQSQNPNPPSTIIQNNVDPAENPSSSTLSQDTLLQLPPSSSTSAPIPINPSLSPSLETNSVTNNRITTTDHQKDDVGRRWPKDEVLALINLRCTSLNNNNEEKEGNNNNNKAPLWERISQGMLELGYKRSAKRCKEKWENINKYFRKTKDGNKKRSLDSRTCPYFHQLSNLYNQGKLVVQTERPEISHMNNNNSNNNNNNYPAEQVLQDQTQPVGSGGDFTMQQQQKEEEVDHHHGGEKNLMQVPAASLDFDQF. 617
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g06557 616 MobiDBLite consensus disorder prediction 341 440 - -
Seca7g06557 616 PANTHER FI21293P1 68 594 - -
Seca7g06557 616 SMART sant 438 506 IPR001005 -
Seca7g06557 616 SMART sant 103 160 IPR001005 -
Seca7g06557 616 CDD GT1 440 511 - -
Seca7g06557 616 Pfam Myb/SANT-like DNA-binding domain 440 532 IPR044822 -
Seca7g06557 616 Pfam Myb/SANT-like DNA-binding domain 106 186 IPR044822 -
Seca7g06557 616 MobiDBLite consensus disorder prediction 341 429 - -
Seca7g06557 616 MobiDBLite consensus disorder prediction 587 601 - -
Seca7g06557 616 Coils Coil 207 234 - -
Seca7g06557 616 FunFam Trihelix transcription factor GT-2 107 163 - -
Seca7g06557 616 MobiDBLite consensus disorder prediction 573 616 - -
Seca7g06557 616 MobiDBLite consensus disorder prediction 191 227 - -
Seca7g06557 616 FunFam Trihelix transcription factor GTL2 442 509 - -
Seca7g06557 616 ProSiteProfiles Myb-like domain profile. 441 504 IPR001005 -
Seca7g06557 616 Gene3D - 107 163 - -
Seca7g06557 616 Gene3D - 442 509 - -
Seca7g06557 616 ProSiteProfiles Myb-like domain profile. 99 158 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g06557 Seca-Chr7 167349336 167352006 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g06557 1 536 Trihelix Transcription Factor Family AT5G28300 38.746 1.91e-96 306
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Seca7g06557 Myb_DNA-bind_4 3.7e-19 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g06557 - - gmx:100804367 670.618