Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g06554 ATGGAGCAGTATGAAATACTTGAGCAAATAGGAAAAGGTGCTTTTGGTTCAGCACTACTTGTGAGACATAAGCATGAGAAGAAAAAATATGTGCTGAAGAAGATTCGCCTTGCCCGTCAAACTGAACGCTCTCGTAGATCTGCCCACCTGGAGATGGAACTCATCTCTAAATTACGAAACCCATTTGTTGTGGAGTATAAAGATTCATGGGTAGAAAAGGGTTGCTATGTCTGCATTATTATAGGTTATTGTGAGGGTGGAGATATGGCGGAAGCTATAAAGAAAGCTAATGGTGTTCTGTTTCCTGAGGAGAAACTTTGTAAGTGGCTTGTTCAACTTCTTATGGCACTTGACTACCTACACATGAATCACATTCTTCATCGTGATGTCAAGTGTTCAAATATCTTCTTGACGAAAGATCATGACATACGCCTCGTGATCAATGATGAAGCAGGTGATTTTGGACTTGCCAAAATGTTGACTTCTGATGATCTTGCTTCCTCTGTTGTTGGAACTCCTAGCTACATGTGCCCTGAGCTCCTTGCTGATATACCTTATGGTTCTAAATCAGATATTTGGTCCTTGGGATGTTGTATATATGAAATGACATCACACAAGCCCGCATTCAAAGCATTTGATATACAAGCATTGATTAACAAGATTAATAAATCCATAGTGGCTCCACTGCCAACAAAATATTCTAGTTCATTTCGAGGTCTTGTTAAAAGCATGCTGCGGAAAAATCCAGAACTTAGGCCCAGTGCATCAGAGCTGCTTGGGCATCCACATCTTCAATCTTATGTTCTTAAGGTCCATCTCAAAATCAATAGCCCCAGGCGAAGTACATTACTTGTTCATTGGCCAGAATCAAACTACATGAAGAAAACTAGATTTTTGGTTCCAGAAGATGACACTGTTTCCATCTATAGGGATAAGCGGAATTCTTTCAGCAATGATCGGACTCTAAATCCTAGTATATCTGGAGCTGATCAAGATTCTGTATGCTCTACTCTAGAAATAGATTGTACTCCTGATCATTTGAATAAAAGATTAGCAGAACTATATATTGGAGATAGTCGTGAAGTGAAGTCGATCCATAAGCCTGTTGTTTCCAGAACTTCAAGTATTGCTAAGACTCCAAGATTTACTTCATCAAAAGTTTCTGCCACCAACAAGAAATCAATGGAACCCTCAAAGAATCGTAAGGTGCTTCCTGTTTCACATCATAGCACAAAGTCTGCTCAGACAAATCGCAGAGCATCACTTCCATTGCCAACAAAGGGAGGTATTCAGCAGCCTCCTCGCAGGCACAGTGTTGGTTTGCTTAGCCATGTATCTTCACTAGATATCTCAGTGAACTCTCCCCGTATTGACAAGATAGCTGAATTCCCATTAGCATCATATGAAGATTCTTTGTTCCCTATGAACAGAACATCAACCTCTGCACAAGGTTCAACTGTGATAGACAAATGCACGGTAGAGGTATGTGATAAAGCCTCTATTAGGGCTAGTTGTACGGATGCTTGGCAGGGAATCAAGCGCAGCATGTTGAAGGAAATTGATGAGGATAAAAGTGGTTCCTCTGATCAGAATGCAACAGCGGGCGCATCAAGCCGCACCTCTTCAGATTTGCGGCGCCGACAGTTTGACACTTCATCATACCAACAAAGGGCTGAAGCCTTGGAAGGGTTGCTTGAATTTAGTGCAAGATTGCTACAACAAGCAAGGTATGATGAACTTGGGGTTTTGTTGAAACCATTTGGGCCTGGGAAGGTTTCCCCAAGGGAAACTGCTATCTGGTTGAGTAAGAGCTTCAAAGAGAACAATTTCAACCCGGAGGAATCCCCATAA 1851 0.416 MEQYEILEQIGKGAFGSALLVRHKHEKKKYVLKKIRLARQTERSRRSAHLEMELISKLRNPFVVEYKDSWVEKGCYVCIIIGYCEGGDMAEAIKKANGVLFPEEKLCKWLVQLLMALDYLHMNHILHRDVKCSNIFLTKDHDIRLVINDEAGDFGLAKMLTSDDLASSVVGTPSYMCPELLADIPYGSKSDIWSLGCCIYEMTSHKPAFKAFDIQALINKINKSIVAPLPTKYSSSFRGLVKSMLRKNPELRPSASELLGHPHLQSYVLKVHLKINSPRRSTLLVHWPESNYMKKTRFLVPEDDTVSIYRDKRNSFSNDRTLNPSISGADQDSVCSTLEIDCTPDHLNKRLAELYIGDSREVKSIHKPVVSRTSSIAKTPRFTSSKVSATNKKSMEPSKNRKVLPVSHHSTKSAQTNRRASLPLPTKGGIQQPPRRHSVGLLSHVSSLDISVNSPRIDKIAEFPLASYEDSLFPMNRTSTSAQGSTVIDKCTVEVCDKASIRASCTDAWQGIKRSMLKEIDEDKSGSSDQNATAGASSRTSSDLRRRQFDTSSYQQRAEALEGLLEFSARLLQQARYDELGVLLKPFGPGKVSPRETAIWLSKSFKENNFNPEESP. 617
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g06554 616 ProSiteProfiles Protein kinase domain profile. 4 264 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca7g06554 616 Pfam Protein kinase domain 4 263 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca7g06554 616 ProSitePatterns Protein kinases ATP-binding region signature. 10 33 IPR017441 GO:0005524
Seca7g06554 616 Gene3D Transferase(Phosphotransferase) domain 1 84 280 - -
Seca7g06554 616 Gene3D Phosphorylase Kinase; domain 1 1 83 - -
Seca7g06554 616 FunFam Serine/threonine-protein kinase Nek2 1 83 - -
Seca7g06554 616 CDD STKc_Nek 3 264 - -
Seca7g06554 616 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 1 566 - -
Seca7g06554 616 MobiDBLite consensus disorder prediction 368 394 - -
Seca7g06554 616 MobiDBLite consensus disorder prediction 407 422 - -
Seca7g06554 616 ProSitePatterns Serine/Threonine protein kinases active-site signature. 125 137 IPR008271 GO:0004672|GO:0006468
Seca7g06554 616 MobiDBLite consensus disorder prediction 367 435 - -
Seca7g06554 616 FunFam Serine/threonine-protein kinase Nek3 86 338 - -
Seca7g06554 616 MobiDBLite consensus disorder prediction 520 551 - -
Seca7g06554 616 SMART serkin_6 4 264 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca7g06554 616 SUPERFAMILY Protein kinase-like (PK-like) 1 309 IPR011009 -
Seca7g06554 616 MobiDBLite consensus disorder prediction 527 542 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g06554 Seca-Chr7 167300135 167308732 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g06554 10 281 MAP Kinase Kinase Kinase AT1G53570 30.824 2.31e-34 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Seca7g06554 Pkinase 9.8e-60 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g06554 K08857 - gmx:100804898 1077.39