Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g06548 ATGGCCTCAGAGGGGTTAGGGGATGATTTCTTCGAGCAGATCTTAGCAGTGCCTGATTCTTCACCTTCAGTTGGATATGCCAGAACTGTCATGAGCGATGTGGGACTCTTGCAGTTGGGCTCCACAGCCACTGCCTCTGCTTTGCCTCTGAGAGGAGGAGGAGGAATGCCTTTGGGGCTGAATTTAGAGCAAAGTGGCTTTCTCAGACACCAAGATACCACACGCTTCGTTGACGACGTTGATGCTACTACCATCACCATCAACAATAACCACCACCACCAACATCCCCTCCATCTCCATAATAACAACAACAATAACAATAGCAATAGCACCTCCTCCTCTTCTTCTTCTACTGCAGGAATCACCCAGGATAGGGATTCGATGCATATAAGGGGTCTCTTTTCAACGTTCGGACAAATGCATACTCCTCCTCACTCTCTCCGCCCAACTCTGCCATCTCCTCCACCACCTCCTCAACCCCAACTCCACCTCCACCATCACCAACAGCCGTTTCAGAGACAGTCACCAAGTCCAGCGTCTGTGCCACAACCACCTGGGATTCGTCCTCGAGTGCGAGCAAGAAGAGGGCAAGCCACAGACCCTCACAGTATTGCTGAGCGATTACGTCGTGAAAGAATCGCTGAAAGAATGAAGGCATTGCAGGAATTAGTTCCCAGCATCAATAAGACCGACAGAGCAGCAATGCTTGATGAAATTGTGGATTATGTCAAGTTCCTAAGGCTTCAAGTTAAGGTCTTAAGCATGAGTAGACTTGGTGGAGCTGGTGCAGTTGCTCAACTTGTGGCTGATGTTCCCGTTTCTGCAGTGGAGGGCCAAGGGGAGGATATAGAAGGTGGAGTCAACCAGCAAGCCTGGGCCAAGTGGTCCAACGATGGCACAGAACAACAAGTGGCTAAACTTATGGAAGAAGATGTTGGAGCAGCTATGCAATTTCTTCAATCCAAGGCACTTTGTATCATGCCAATATCTCTAGCCTCAGCAATTTTCCGTATGCCCCCCCAATCAGAAGGATCAACAATCATCAAGCCTGAATCTAACAGCCACTCATAG 1071 0.4911 MASEGLGDDFFEQILAVPDSSPSVGYARTVMSDVGLLQLGSTATASALPLRGGGGMPLGLNLEQSGFLRHQDTTRFVDDVDATTITINNNHHHQHPLHLHNNNNNNNSNSTSSSSSSTAGITQDRDSMHIRGLFSTFGQMHTPPHSLRPTLPSPPPPPQPQLHLHHHQQPFQRQSPSPASVPQPPGIRPRVRARRGQATDPHSIAERLRRERIAERMKALQELVPSINKTDRAAMLDEIVDYVKFLRLQVKVLSMSRLGGAGAVAQLVADVPVSAVEGQGEDIEGGVNQQAWAKWSNDGTEQQVAKLMEEDVGAAMQFLQSKALCIMPISLASAIFRMPPQSEGSTIIKPESNSHS. 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g06548 356 Gene3D - 192 254 IPR036638 GO:0046983
Seca7g06548 356 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 76 333 - -
Seca7g06548 356 FunFam Basic helix-loop-helix transcription factor 192 254 - -
Seca7g06548 356 SMART finulus 203 252 IPR011598 GO:0046983
Seca7g06548 356 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 195 256 IPR036638 GO:0046983
Seca7g06548 356 Pfam Helix-loop-helix DNA-binding domain 202 246 IPR011598 GO:0046983
Seca7g06548 356 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 197 246 IPR011598 GO:0046983
Seca7g06548 356 MobiDBLite consensus disorder prediction 99 122 - -
Seca7g06548 356 MobiDBLite consensus disorder prediction 136 201 - -
Seca7g06548 356 MobiDBLite consensus disorder prediction 92 122 - -
Seca7g06548 356 MobiDBLite consensus disorder prediction 147 163 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g06548 Seca-Chr7 167239820 167244621 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g06548 167 353 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G02590 72.872 8.94e-78 237
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca7g06548 HLH 3.6e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g06548 - - vun:114189791 395.586