Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g06546 ATGACAAGCGCGGTGGACGCAGAGCGAGACAAGTACAGCATGATCAATTTCGAAGAGACCGAGTTGCGACTCGGTCTTCCTGGCGGCTCTGCAAATGATCACGGCGGCGAGTCATCCATCAAGACCAGTGCTGGAAAAAGAGGTTTCTCAGAGACTACTAATGTCGATTTGAAGCTTAATCTTTCTTCCACGAACGACTTAGCCTCTGCTTCTGTCTCTGTTTCTCCCTCAACTGTGGCCACAGAGAAGAAGACTACTGCTACTACTGCACCTCCTCCTCGTGCTAATGACCCTGCAAAACCACCTGCAAAGGCACAAGTGGTGGGTTGGCCACCAGTTCGATCCTTCAGAAAGAACATTGTGAGTGGTCAAAGGAGCAACAACGAAGATGCAGAGAAGAGCAAAACCACCACTACCACCAACAACAATGGCGCCACCAACAGTGGCGCAGCGTTCGTGAAGGTGAGCATGGATGGTGCACCATATCTACGGAAGGTGGACCTGAAGCTGTACAAGAGCTACCAAGAGCTGTCAGATGCGCTGGCTAAGATGTTCAGTTCCTTCACTATTGGGAACTGTGGGTCCCATGGTATGAAGGACTTTATGAATGAGAGCAAATTGGTAGACCTTTTGAATGGCTCTGATTATGTACCCACATACGAAGACAAAGACGGAGACTGGATGCTCGTGGGGGATGTGCCCTGGGAAATGTTCGTTGAATCGTGCAAGCGCCTCCGCATAATGAAGGGTTCTGAGGCAATCGGGCTTGCGCCAAGGGCAGTGGAAAAGTGCAAGAACAGAAGCTGA 807 0.5043 MTSAVDAERDKYSMINFEETELRLGLPGGSANDHGGESSIKTSAGKRGFSETTNVDLKLNLSSTNDLASASVSVSPSTVATEKKTTATTAPPPRANDPAKPPAKAQVVGWPPVRSFRKNIVSGQRSNNEDAEKSKTTTTTNNNGATNSGAAFVKVSMDGAPYLRKVDLKLYKSYQELSDALAKMFSSFTIGNCGSHGMKDFMNESKLVDLLNGSDYVPTYEDKDGDWMLVGDVPWEMFVESCKRLRIMKGSEAIGLAPRAVEKCKNRS. 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g06546 268 ProSiteProfiles PB1 domain profile. 150 250 IPR000270 GO:0005515
Seca7g06546 268 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 16 255 IPR003311 GO:0005634|GO:0006355
Seca7g06546 268 MobiDBLite consensus disorder prediction 35 50 - -
Seca7g06546 268 MobiDBLite consensus disorder prediction 119 147 - -
Seca7g06546 268 Pfam AUX/IAA family 19 259 IPR033389 -
Seca7g06546 268 SUPERFAMILY CAD & PB1 domains 146 249 - -
Seca7g06546 268 Gene3D - 145 262 - -
Seca7g06546 268 MobiDBLite consensus disorder prediction 64 92 - -
Seca7g06546 268 MobiDBLite consensus disorder prediction 25 50 - -
Seca7g06546 268 MobiDBLite consensus disorder prediction 64 106 - -
Seca7g06546 268 FunFam Auxin-responsive protein 145 260 - -
Seca7g06546 268 MobiDBLite consensus disorder prediction 118 147 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g06546 Seca-Chr7 167221519 167225233 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g06546 128 258 B3 DNA Binding Superfamily AT4G23980 31.298 7.43e-09 54.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Seca7g06546 AUX_IAA 1.8e-89 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g06546 K14484 - gmx:100781847 360.533