Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g06542 ATGATGGCAAGGCTTACGCTATGCGTCTTGTCCTTGGTTTGCGTAGTAGCATTGGCGTCTGCTCAAAGTGCCACAGTTCAGTCTACATATCATTTATATGAACCTGAGAAGCATAATTGGGACTTAATGGCAGTGAGTGCATTTTGTGCCACTTGGGATGCTAACCAGCCCTTATCATGGCGCAGCAAATATGGATGGACAGCCTTCTGTGGGCCTGTTGGGCCTCAAGGCCCAGCTGCTTGTGGCAAGTGCCTGAGGGTGAGAAACACTCGAACAGGGAATGAGCAAATAGCAAGAATAGTTGATCAGTGCAGCAATGGGGGGCTTGATTTGGACGTCAGTGTATTCCAAAGGCTGGACTCAGACAGAAATGGGTATGCTCAAGGCCATCTTGTCGTCAAGGTGACGAGTCGGGTGGTGAAAGTAAAGAGCGATACGCTACGAGCATGCATGACATGCCCTCTTTGCCATAACCTCTTCAAAGATGCTACCACCATCTCTCTCTGCCTTCATACCTGTAACTCTCTCTTCTCTTCTCTTCTCTTCTCTTATCTGCTAGCTTTTCGATTTCTTTGCCAATTTCATTTTGATGCTGTTTGCAGGAAGTGCATATATGAGAAACTCTCGGATGAGGAGATGGATTGCTGTCCAGTGTGCAATATTGATCTAGGCTGCCTTCCAGTGGAAAAACTTAGGCCAGACCATAATTTGCAAGATATAAGGGCAAAAATATTCCCTTTTAAGAGAAAAAAGATCAAGGCCCCAGAAGTTGTGTCTTCAATAACCTTGCCAGCAAAAAGGAAGGAAAGATCACTTTCGTCATTGGTGGTTAGTGCTCCCAAAGTTTCAATGCAAACTGGCTTTACTGGAAAGAGAACAAAAACCAGTACAAGAAAGGCTGCTGCATTACGTGGATGCAGTTTTATACTTGATTCTTCTATGGCTGAGACTTCTAAGAAGCATAAGCCCAACAATGAAGATACAGAGAACAATGTGGAACTTACAGAAGGGAAGGTCGATCTCTGGACACCATTGAATTGTCTTGTTGAAGCTGCCAACAGAACAAAGTCCTCCAGGACAAATTCACATTCAAATTCTGTTGCCAAATTAGAGTCTACATCCACTCCTCTTGGTGGACTAAATACTCCTGAAATTAAAACCAAAACAGACCTACCTGCTTCTATGCAGAGTGAATTTAACATTCCTAAAACCAAAAACAAGGATACTGGACATAAAACAATATTTCGAGATGACAAAGACAAGAACAGCGGACCAGCGAAGCGAAGAAGGTTGCGTCCTGCTGGTCAGAAAAGAGTTGCAGCATATGAGATGTCTGCCTCAGCTCCAGCCATGCTAGATGCAACAGGGGGAAAGTGCAAAAGAAAAAACAGTCCTATCTGGTTTTCATTAGTCGCTTCAGAGGACCAGAAAGGAGTTGTTCCCTTGCCACAGATCTCAGCATGTTACTTAAGAATCAAAGATGGTACAGTGCCTGTCTCATTTATACAAAAGTACCTTGTGAAGAAACTTAATCTAGCCAGCGAAACTGAGGTTGAAATAATGTGCCGGGGTCAGCCAGTGCTGCCATCTCTGCAACTGCATAACTTGGTAGATTTGTGGTTCCGGACAGCATCAACCTCAAAGAAGATACCAGCATCTGTAGGGTCCTCAGCTAAGGATTTTGTGATGGTTTTATCATATAGCCGAAAGGCCTTGCCTCCTTGA 1725 0.4417 MMARLTLCVLSLVCVVALASAQSATVQSTYHLYEPEKHNWDLMAVSAFCATWDANQPLSWRSKYGWTAFCGPVGPQGPAACGKCLRVRNTRTGNEQIARIVDQCSNGGLDLDVSVFQRLDSDRNGYAQGHLVVKVTSRVVKVKSDTLRACMTCPLCHNLFKDATTISLCLHTCNSLFSSLLFSYLLAFRFLCQFHFDAVCRKCIYEKLSDEEMDCCPVCNIDLGCLPVEKLRPDHNLQDIRAKIFPFKRKKIKAPEVVSSITLPAKRKERSLSSLVVSAPKVSMQTGFTGKRTKTSTRKAAALRGCSFILDSSMAETSKKHKPNNEDTENNVELTEGKVDLWTPLNCLVEAANRTKSSRTNSHSNSVAKLESTSTPLGGLNTPEIKTKTDLPASMQSEFNIPKTKNKDTGHKTIFRDDKDKNSGPAKRRRLRPAGQKRVAAYEMSASAPAMLDATGGKCKRKNSPIWFSLVASEDQKGVVPLPQISACYLRIKDGTVPVSFIQKYLVKKLNLASETEVEIMCRGQPVLPSLQLHNLVDLWFRTASTSKKIPASVGSSAKDFVMVLSYSRKALPP. 575
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g06542 574 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 140 272 IPR013083 -
Seca7g06542 574 ProSiteProfiles Barwin domain profile. 21 142 IPR001153 GO:0042742|GO:0050832
Seca7g06542 574 MobiDBLite consensus disorder prediction 404 427 - -
Seca7g06542 574 MobiDBLite consensus disorder prediction 354 387 - -
Seca7g06542 574 PANTHER E3 UBIQUITIN PROTEIN LIGASE DRIP1 138 572 IPR044807 GO:0004842
Seca7g06542 574 ProSitePatterns Barwin domain signature 1. 81 89 IPR018226 GO:0042742|GO:0050832
Seca7g06542 574 SUPERFAMILY Barwin-like endoglucanases 25 135 IPR036908 -
Seca7g06542 574 Gene3D - 21 139 IPR036908 -
Seca7g06542 574 Pfam Barwin family 25 136 IPR001153 GO:0042742|GO:0050832
Seca7g06542 574 Gene3D - 451 551 - -
Seca7g06542 574 PRINTS Barwin domain signature 56 74 IPR001153 GO:0042742|GO:0050832
Seca7g06542 574 PRINTS Barwin domain signature 115 139 IPR001153 GO:0042742|GO:0050832
Seca7g06542 574 PRINTS Barwin domain signature 75 93 IPR001153 GO:0042742|GO:0050832
Seca7g06542 574 PRINTS Barwin domain signature 94 112 IPR001153 GO:0042742|GO:0050832
Seca7g06542 574 MobiDBLite consensus disorder prediction 400 436 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g06542 Seca-Chr7 167136819 167145905 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g06542 139 493 C3H Transcription Factor Family AT2G30580 39.535 4.19e-72 233
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g06542 K16277 - gmx:100783999 689.493