LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca7g06538	ATGCACAACAGGGTTTGTCTCTTGCTGACTTTTTGCATCTTGAATGCCCTTCCTGCATGGAGCGTCGATTCAGAGTCATTGATCTTGGGTTGTGGGTTGGGTGAAGGTGGTGGCAAAGATGCTGATGGAAGACAATGGAGCCCTGATAACAAATACCTCTCTGGAGGTAATTCCATCACATCCAAAGCCTCTTTCCAAGACCCTTCTCTTTTATCTGAGATTCCATACATGACAGCACGAGTTTTCACATCTGAGGCAACATACAAATTCCCTGTTCAATCTGATAAACGTTACTGGCTCAGGCTCCATTTTTATCCGTCTGTTTATGGCAGTTTCAACCCCTCTGATTCATATTTCTCTGTTAAAGCAAATGGGGTCACGCTCCTTGCCAATTTCAGCGCCTCAATTACATGTCAAGCCCTCTCACAGGCCTATCTTGACAGAGAGTATTCCCTTGCGCCTTTGAATTCAGATACTCTCACTGTTACCTTCAAGCCTTCTGATAAACACAATGGGGCTTTTGCTTTTGTCAATGGAATTCAGCTGATCCAAATGCCTGAGTTGTTTGATTCAGCTTCAATGGTGGGTTATGCTGACCAAACCGTGGATGCAAAAAGTTTGCATCTTCAAACAATGTTTAGATTAAACGTTGGTGGGCAATATATATCTCCAGTTCATGATTCTGGTCTAAACAGGATGTGGTATGATGATTCTCCTTACCTGTTTGGTGCTGCCACTGGTGTCACCACACAAGCTGACAAGAAGGTTAAAATCAACTACGAGAGCATGCCTCAGTACATTGCACCACCAGATGTCTACTCCACATCAAGATCCATGGGAACCAATAAGGATGTTAACATGGGGTATAATCTCACATGGATTTTCCAAGTTGATCCAAATTCCATGTACCTTACAAGGTTGCATTTTTGTGACTTCTACTTTTCAAAAGTCAATGAGATTGTTTTCAATATATATGTCAACAACCAAACGGCAGAGGCTCAAGCTGATGTGATAGGGTGGACAGGAGGTAAAGCAATGCCAACTTACAAGGACTATGTAGTATATGTCCAAGATGGGCCAGGTGATGAGCAGCTTTGGCTTGCATTGCACCCAGCACCTGATACAAAGCCTGAGTACTATGATGCCATACTCAATGGGGTTGAGATATTCAAGCTCAATGACACTGACCTATCTGGCCCCAATCCTCAACCTTCTGACATGCTGGTTGAACATGAGGAGAAGGAAAGAACTTTCCAAGACAACAAACATCAAAAAAGGACTTTTGTTATTGGTGGAGCTGCTGGAGGTGCTGCAGGTTTTGCCTTAGTGGCTGCAATTTGTGTTGTTGTGCACCAAAAGAAGAGGACATCTCCAGGATCATATTCCAACACATCAAGCTGGCTGCCCTTATATGGAAACTCTCACACAACCGGCACCAAATCCACAGGGTCAGGGAAAAGTGTTGGTAGTGCCAACTTAGCCATGGCTCAAGGACTATGCCGTTATTTCTCTTTACAAGAGATGAAGCAAGCAACCAAGAATTTTGATGAGGCCAATGTCATTGGTGTAGGAGGCTTTGGAAAGGTTTACAAGGGTGTTGTTGATAATGGGTTTAAAGTGGCAATCAAAAGATCAAACCCACAATCAGAACAAGGAGTCAATGAATTCCAAACTGAAATTGAGATGCTTTCTAAGCTTAGACATAAACATTTGGTGTCCTTGATTGGTTTTTGTGAAGAAGATGATGAGATGTGCCTTGTTTATGACTACATGGCTCTTGGCACTCTAAGAGAACATCTCTACAAGGGAAACAAACCATTGGATACTCTATCATGGAAACAAAGGTTGGAGATTTGCATTGGAGCAGCAAGAGGCCTTCACTACCTTCACACTGGGGCCAAGTACACCATCATTCATAGAGATGTTAAAACAACCAACATTCTCCTTGATGAAAATTGGGTTGCCAAGGTTTCAGATTTTGGATTGTCAAAAACAGGACCAAACATGAACAATGGTCATGTTAGCACTGTGGTGAAGGGTAGTTTTGGATATTTAGATCCAGAATATTTCAGGAGGCAACAGTTAACTGAAAAATCTGATGTCTACTCATTTGGGGTTGTCCTGTTTGAAGCCCTATGTGCAAGACCAGCTCTGAATCCTAACCTTCCAAAGGAACAAGTAAGCCTTGCAGATTGGGCTCTTCTGTGCAAAAGAAAAGGGACACTGGAGGATATTATTGACCCCAATCTCAAAGGAAAGATAAACCCAGAAAGCTTGAAGAAGTTTGCAGATGCAGCTGAAAAGTGTTTATCAGATCATGGACTTGACCGCCCTTCCATGAATGATCTATTATGGAATCTGGAGTTTGCTCTGAACCTGCAAGAAAACCCTGATGGTTCAAGCCATGCACCACGTGTTGAAGAAGGTGAGTTTGAAGAGATGGCAGCACATTATAGAAACCTGAATCTTGGAAGTGAGAATGAGATCAGCCAAGACTCAAGTGAAAATTCGGCTCCCATCTTCTCACAAATGGTCAATCCAAAAGGGCGATGA	2553	0.4277	MHNRVCLLLTFCILNALPAWSVDSESLILGCGLGEGGGKDADGRQWSPDNKYLSGGNSITSKASFQDPSLLSEIPYMTARVFTSEATYKFPVQSDKRYWLRLHFYPSVYGSFNPSDSYFSVKANGVTLLANFSASITCQALSQAYLDREYSLAPLNSDTLTVTFKPSDKHNGAFAFVNGIQLIQMPELFDSASMVGYADQTVDAKSLHLQTMFRLNVGGQYISPVHDSGLNRMWYDDSPYLFGAATGVTTQADKKVKINYESMPQYIAPPDVYSTSRSMGTNKDVNMGYNLTWIFQVDPNSMYLTRLHFCDFYFSKVNEIVFNIYVNNQTAEAQADVIGWTGGKAMPTYKDYVVYVQDGPGDEQLWLALHPAPDTKPEYYDAILNGVEIFKLNDTDLSGPNPQPSDMLVEHEEKERTFQDNKHQKRTFVIGGAAGGAAGFALVAAICVVVHQKKRTSPGSYSNTSSWLPLYGNSHTTGTKSTGSGKSVGSANLAMAQGLCRYFSLQEMKQATKNFDEANVIGVGGFGKVYKGVVDNGFKVAIKRSNPQSEQGVNEFQTEIEMLSKLRHKHLVSLIGFCEEDDEMCLVYDYMALGTLREHLYKGNKPLDTLSWKQRLEICIGAARGLHYLHTGAKYTIIHRDVKTTNILLDENWVAKVSDFGLSKTGPNMNNGHVSTVVKGSFGYLDPEYFRRQQLTEKSDVYSFGVVLFEALCARPALNPNLPKEQVSLADWALLCKRKGTLEDIIDPNLKGKINPESLKKFADAAEKCLSDHGLDRPSMNDLLWNLEFALNLQENPDGSSHAPRVEEGEFEEMAAHYRNLNLGSENEISQDSSENSAPIFSQMVNPKGR.	851

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca7g06538	850	ProSiteProfiles	Protein kinase domain profile.	515	790	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Seca7g06538	850	Gene3D	Phosphorylase Kinase; domain 1	477	590	-	-
	Seca7g06538	850	Gene3D	-	30	186	-	-
	Seca7g06538	850	Gene3D	-	207	393	-	-
	Seca7g06538	850	ProSitePatterns	Protein kinases ATP-binding region signature.	521	543	IPR017441	GO:0005524
	Seca7g06538	850	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	637	649	IPR008271	GO:0004672\|GO:0006468
	Seca7g06538	850	MobiDBLite	consensus disorder prediction	826	843	-	-
	Seca7g06538	850	FunFam	Receptor-like protein kinase FERONIA	591	803	-	-
	Seca7g06538	850	SUPERFAMILY	Protein kinase-like (PK-like)	494	790	IPR011009	-
	Seca7g06538	850	PANTHER	OS07G0166700 PROTEIN	500	794	IPR045272	GO:0004714\|GO:0006468
	Seca7g06538	850	MobiDBLite	consensus disorder prediction	826	850	-	-
	Seca7g06538	850	Gene3D	Transferase(Phosphotransferase) domain 1	591	803	-	-
	Seca7g06538	850	FunFam	FERONIA receptor-like kinase	26	186	-	-
	Seca7g06538	850	CDD	STKc_IRAK	521	788	-	-
	Seca7g06538	850	SMART	serkin_6	515	790	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Seca7g06538	850	Pfam	Malectin-like domain	30	391	IPR024788	-
	Seca7g06538	850	Pfam	Protein tyrosine and serine/threonine kinase	519	783	IPR001245	GO:0004672\|GO:0006468
	Seca7g06538	850	FunFam	receptor-like protein kinase FERONIA	477	590	-	-
	Seca7g06538	850	FunFam	FERONIA receptor-like kinase	207	393	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca7g06538	Seca-Chr7	167113448	167116021	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca7g06538	24	850	Receptor kinase-like Gene Family	AT3G51550	54.014	0.0	874

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_CrRLK1L-1	Seca7g06538		Malectin_like	7.9e-39	CL0202

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca7g06538	-		-	gmx:100791236	1402.11