Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g06536 ATGTCTGCCACCAAGCAAGCCAAGGCCAAGAAAACGGCGTCGTTGAAGAAGCCACTCTCTCACCCTCCCTTCGCTGAGAAGATGATAACCGACGCGATTGTGAGCCTGAAGGAGAGGACTGGTTCGAGCCAGTATGCCATAACCAAGTTCATCGAAGAGAAGCACCACAAGGAGTTACCACAGACCTTCCGAAAGCTTATCCTCCACCAGCTGAAAAAGGCGGTTGCCGCCGGCAAGCTCGTTAAGGTTAAGAACTCCTTCAAACTAGCGCCGACTCGACCTGCTCCGGCGAAGACTACCACTGCTGCTCCTGCTGCAACCAAGAAGCCTAAAGCTGCTGCGTCTAAGCCAGCTACCAAGAAGCCTGCAGCTTCTTCCAAGCCGAAGCCCAAAGCTGCAGCGAAGCCGAGCACCGCTGCGAAGCCCAAGCCCAAGCCCAAAGCAAAGCCTGCTAAGGCTACCGCGGGGAAGAAGGTTGCAGCTGCTAAGCCAGCAAGGAAGACGCCCGTAAAGAGTGTGAAGAAGCCTAAGAGCGTGAAATCGCCGGCGAAGAAAGCTAAGAAGTGA 567 0.5503 MSATKQAKAKKTASLKKPLSHPPFAEKMITDAIVSLKERTGSSQYAITKFIEEKHHKELPQTFRKLILHQLKKAVAAGKLVKVKNSFKLAPTRPAPAKTTTAAPAATKKPKAAASKPATKKPAASSKPKPKAAAKPSTAAKPKPKPKAKPAKATAGKKVAAAKPARKTPVKSVKKPKSVKSPAKKAKK. 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g06536 188 CDD H15 20 92 IPR005818 GO:0000786|GO:0003677|GO:0006334
Seca7g06536 188 MobiDBLite consensus disorder prediction 1 21 - -
Seca7g06536 188 Pfam linker histone H1 and H5 family 22 90 IPR005818 GO:0000786|GO:0003677|GO:0006334
Seca7g06536 188 MobiDBLite consensus disorder prediction 168 188 - -
Seca7g06536 188 MobiDBLite consensus disorder prediction 86 188 - -
Seca7g06536 188 PANTHER HISTONE H1 5 182 - -
Seca7g06536 188 SMART h15plus2 18 86 IPR005818 GO:0000786|GO:0003677|GO:0006334
Seca7g06536 188 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 20 91 IPR005818 GO:0000786|GO:0003677|GO:0006334
Seca7g06536 188 PRINTS Histone H5 signature 110 124 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Seca7g06536 188 PRINTS Histone H5 signature 167 186 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Seca7g06536 188 PRINTS Histone H5 signature 7 28 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Seca7g06536 188 PRINTS Histone H5 signature 145 162 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Seca7g06536 188 SUPERFAMILY "Winged helix" DNA-binding domain 18 100 IPR036390 -
Seca7g06536 188 Gene3D - 15 102 IPR036388 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g06536 Seca-Chr7 167097123 167098450 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g06536 23 134 Single Myb Histone (SMH) Gene Family AT1G72740 30.702 4.42e-07 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g06536 K11275 - gmx:100785055 115.161