Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g06521 ATGGAGGGAAAAACTGGGGATGAAGTGGTGGATATTGAGAGTTCTTCTAGCGGTTCTTTCAGTGATGATTTGGATGATGAGGGATCTTTGCCTTCTGAAATTGATGACAAAGTGCATCTTGAGGAACCTCTGACAGAGGAGGAAATAGAAGACCTTATTTCTGAGTTGTTAGAAGTGGAGAGTAAGGCTGCAGAGGCCCAAGAAGCTCTTGAAGAGGAGTCTCTTGCTAAAGTGGAGGGTGAAGTTAGACAAGAATTGATGCAAACTCTAGAGGGTGATGAACTGGAAACTGCTGTTTCTAATGAGATGACTGCTTTCAAAGAAGAGTGGGAAGCTGTTCTGGATGACCTTGAAACTGAAAGTGCCAACTTGCTGGAACAACTTGACGGGGCTGGAATTGAGCTCCCAAGTCTTTATAAGTGGATTGAAAGAGAAGCTCCCAATGGCTGCTGCACTGAAGCATGGAAAATGAGAAATCATTGGGTTGGGTCTCACGCAACTCCTGAAATTGCTAAGTCAATTGCTGATGCTGAAAAGCATCTACATGTAAATAGACCTGTTAGAAGGCGACATGGTAAATTACTGGAAGAGGGCGCTAGTGGTTTTCTCCAGAAAAAACTTTCCGATGAAACCCAGGAGCCTGTAAAGAAAGAAATCGAGGGGGATTGGGATCTGTTTAATAAATTAATTTCTGATGGAAGTGCAGTTGATGCTTCTTTTGGCAGTAAGAATTGGGCTTCTGTTTATTTGGCCAGCACACCACAACAAGCTGCCCTGATGGGGCTCAAATTTCCCGGAGTTAATGAGGTGGAGGAAATTGATGATGTTGATGGCAATTCTACTGATCCGTTTGTTGCGGCAGCCATTGCCAATGAAAGAGAACTAGATCTTTCTGATGAGCAAAGGAGACAGTTTAAAAAGGTCAAAGAAGAGGATGATGCAATTGTTGATAGGAAGCTTCAAATCCATTTGAAACGTAGGAGGCATCAAAAGAAAAGTAAACAGCGAGAAATGAGCACACCTATCCTGTTGACGGAGAGCCACATACAGAAGCCTTCTTCTGTTGATCATTTTAACCCTGTCATGAAGGAAGGGACTAGTGATGTTGGGGAAATTGTGTCAGACCATGACAGGGTCGCATGCCTGAATCTTAAGCATGATAAAATTGAACATTCTGATACCTGTCTTCATCTTGACGAAGAAAAGCCTATGAGTACTGCTTCATTGGACGATGTTATTGAACAGAGAGGAACCAAGCGTCTGAATGATGGTGAGCTTGGTGCTGATAATAAAAAGTCTCGGACTGTTATTGTTGACAAAGATGATGAAGCAGATGCTGCTGAAGATGAGTTGGATTGTGATACGCTACAGAATCAATCCAAGATAAAAGAAGGTTTATGTAACAGTCGTGCTGATGCTTTTCCTTCAGAGAGTCAGGATGAGAAATTTTGCTGCACAGTTTGCGATAAAGTAGCTCTTGAAGTGCACTCACACCCTCTTTTAAAAGTGATCATTTGTGGAGATTGCAATTCCTTAATGAAAGAAAAGACACGTGCAAAGGACCTGGTTGATGAGTGTTCTGAGTGTTACTGTGCATGGTGCGGAGGAAGCAGTGAATTAGTAAGTTGCAAGTTATGCAAGACATTATTCTGCATCAAATGTATACAGAAGAATCTTGGTGTAGAATTTGTTGCTGAAGCTCAGGCCACTAATTGGCATTGTTGTTGTTGCCGTCCAAATCTGCTTGAAAGACTTTCATTGCAACTAGAGAAAGCTATGGGATCTGATAATATACTAGTTTCCAGTTCTGGTAGTGATTCAGATGATTCAGACTCAGAGACAAATGTTACAATGAGTGATCAAATCTTGTCATTTTTTTCCAGCTCTAAACGAAGACGTAAAAAGAAGATTCGGAGGATACTCGATGATGCTGAATTAGGAGAAGAGACGAAAAAGAAAATAGCAATTGAAAAGGAACGTCAGGAACGCCTGAAGTCTTTGCGAGTACAATTTTCTGCCTCATCAATTGAAACGAACTCTGCTGGCTGTAATGGGAATTTGTCTGAAAGTGCAAGCATTGAAATTCTTGGTGATGCACAAGCAGGTTACATAGTGAATGTTGTAAGGGAGAAAGGTGAAGAAGCTGTCAGAATTCCTCCTAGCATCTCAGCTAAACTGAAGGCCCATCAGGTTGCTGGAATAAGATTCATGTGGGAAAATATAATACAGTCAATCAGAAAAGTGAAGTCTGGGGATAAAGGTCTTGGTTGTATTTTAGCTCATACCATGGGCCTTGGTAAAACTTTTCAGGTGATAGCTTTCTTGTACACTGCGATGCGAAGTGTTGATTTGGGGTTAAGAACTGCACTTATAGTCACACCTGTCAATGTACTACATAATTGGCGGCATGAGTTCATCAAATGGTCACCATCAGAATTAAAGCCTCTCAGGGTCTTCATGCTGGAAGATGTATCAAGAGATAGGAGGGCACAACTGCTTGCAAAGTGGAGAGCTAAAGGTGGTGTATTTTTAATAGGCTACACTGCTTTCCGAAATTTGTCTTTTGGAAAGCATGTGAAAGATCGGCACATTGCCAGGGAAATCTGCCAAGCTTTGCAGGATGGACCTGACATTCTTGTTTGTGATGAAGCCCATATGATAAAAAATACTAAGGCTGATGTCACTCAAGCCTTGAAACAAGTAAAATGCCAAAGAAGAATTGCGCTTACCGGGTCGCCTCTTCAAAACAATCTCATGGAATATTATTGTATGGTTGATTTTGTACGAGAAGGTTTTCTTGGAAGCAGTCATGAATTTAGGAACCGCTTCCAAAATCCCATAGAGAATGGTCAACATACTAATTCAACTCTGACTGATGTAAAAATTATGAACCAAAGGTCTCATATCCTCTATGAACAGTTAAAAGGCTTTGTCCAAAGAATGGACATGAATGTTGTGAAGAAGGATCTACCTCCCAAAACTGTCTTTGTGATAACAGTCAAGCTTTCTCCCCTACAAAGAAAATTGTATAAGAGATTCCTTGATGTGCACGGGTTCACTAATGTTAGGGCGCATCATGAGAAGTTAAGAAAGAGAAGTTTTTTTGCTGGGTACCAGGCATTGGCTCGGATATGGAATCACCCCGGGATCTTGCAATTGTCAAAAGAAGACAAGGACTACGTGAGACAGGAAGATGCTGTTGAGAATTTTCTTGTTGATGATATCTCCAGTGATGAAAATTCAGATTCTAATGTTCTTACTGGAGAGAAAATGAAGAATACAAATGATGTGCCAGTGCTACAAAGGAAGGATGGTAATGGCTTCTTCATAAAGGGTTGGTGGAATGATCTTCTTCATGAAAAAATATATAAAGAGCTTGATCAAAGTGGCAAAATGGTTTTGCTGATAGATATACTAACCATGAGTTCTGACGCGGGCGATAAGGTGTTAGTTTTTAGTCAGAGCATCCCGACTCTAGACCTTATCGAGCTTTATCTCTCAAGAATACCTCGACGTGGCAAACGAGGGAAGTTTTGGAAGAAAGGAAAAGATTGGTATAGGCTGGATGGAAGGACAGAGAGCTCGGAAAGGCAGAAGCTTGTTGAGAGATTTAATGAGCCTTTGAATAGGAGGGTAAAATGCACATTGATTTCAACCAGAGCGGGATCTTTGGGTATTAATCTTCATGCAGCTAACCGTGTTGTTATAGTTGATGGCTCTTGGAATCCCACATACGATCTCCAGGCTATCTATCGAGCTTGGAGGTATGGGCAGAGAAAGCCTGTGTTTGCATATCGATTACTGGCTCATGGAACTATGGAAGAGAAAATATATAAGCGCCAGGTAACAAAGGAGGGGCTTGCTGCTAGAGTGGTCGATAGACAACAGGTGCATAGGACTATATCTAAAGAAGAAATGCTGCATCTTTTTGAGTTTGGTGATGATGAGAACCCTGAGACTTTGGCTGAACTAAGTCAAGAAAATGGTCACACTTGTGATCAAAGTAACCCAATTTTGGTTGGGCATTCGCTGAAACATACAGTACCACATTCAAATGGAAGCAGTTATTCTGATAAGTTGATGGAAAGCTTACTTAGCAAGCATCATCCACGGTGGATTGCCAATTATCATGAACATGAATCTTTGCTACAAGAAAATGAAGAGGAAAAGCTGTCTAAAGAGGAGCAAGATATGGCTTGGGAGGTATATCGGAAATCGCTGGAATGGGAAGAAGTGCAGAGAGTACCGCTTGGTGAGTCTATTCCAGATCAAAAGGCAGAAATGCCAACGGCAAAGCCCCATGCATCTGAGATCCGCAGCACCTCACCAAATAAGCTAAGCAATCGATTTGTGACACGGAAATGTACCAACCTTGCGCACATGCTGACACTTAGAAGTCAAGGAATAAAAATTGGTTGCAGTACAATTTGTGGGGAATGTGCCCAGGAGATTAGTTGGGAAGACCTGAGGAGTAGAGATAGGAATGTGGCAACCTGA 4497 0.4161 MEGKTGDEVVDIESSSSGSFSDDLDDEGSLPSEIDDKVHLEEPLTEEEIEDLISELLEVESKAAEAQEALEEESLAKVEGEVRQELMQTLEGDELETAVSNEMTAFKEEWEAVLDDLETESANLLEQLDGAGIELPSLYKWIEREAPNGCCTEAWKMRNHWVGSHATPEIAKSIADAEKHLHVNRPVRRRHGKLLEEGASGFLQKKLSDETQEPVKKEIEGDWDLFNKLISDGSAVDASFGSKNWASVYLASTPQQAALMGLKFPGVNEVEEIDDVDGNSTDPFVAAAIANERELDLSDEQRRQFKKVKEEDDAIVDRKLQIHLKRRRHQKKSKQREMSTPILLTESHIQKPSSVDHFNPVMKEGTSDVGEIVSDHDRVACLNLKHDKIEHSDTCLHLDEEKPMSTASLDDVIEQRGTKRLNDGELGADNKKSRTVIVDKDDEADAAEDELDCDTLQNQSKIKEGLCNSRADAFPSESQDEKFCCTVCDKVALEVHSHPLLKVIICGDCNSLMKEKTRAKDLVDECSECYCAWCGGSSELVSCKLCKTLFCIKCIQKNLGVEFVAEAQATNWHCCCCRPNLLERLSLQLEKAMGSDNILVSSSGSDSDDSDSETNVTMSDQILSFFSSSKRRRKKKIRRILDDAELGEETKKKIAIEKERQERLKSLRVQFSASSIETNSAGCNGNLSESASIEILGDAQAGYIVNVVREKGEEAVRIPPSISAKLKAHQVAGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVDLGLRTALIVTPVNVLHNWRHEFIKWSPSELKPLRVFMLEDVSRDRRAQLLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRHIAREICQALQDGPDILVCDEAHMIKNTKADVTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQNPIENGQHTNSTLTDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVITVKLSPLQRKLYKRFLDVHGFTNVRAHHEKLRKRSFFAGYQALARIWNHPGILQLSKEDKDYVRQEDAVENFLVDDISSDENSDSNVLTGEKMKNTNDVPVLQRKDGNGFFIKGWWNDLLHEKIYKELDQSGKMVLLIDILTMSSDAGDKVLVFSQSIPTLDLIELYLSRIPRRGKRGKFWKKGKDWYRLDGRTESSERQKLVERFNEPLNRRVKCTLISTRAGSLGINLHAANRVVIVDGSWNPTYDLQAIYRAWRYGQRKPVFAYRLLAHGTMEEKIYKRQVTKEGLAARVVDRQQVHRTISKEEMLHLFEFGDDENPETLAELSQENGHTCDQSNPILVGHSLKHTVPHSNGSSYSDKLMESLLSKHHPRWIANYHEHESLLQENEEEKLSKEEQDMAWEVYRKSLEWEEVQRVPLGESIPDQKAEMPTAKPHASEIRSTSPNKLSNRFVTRKCTNLAHMLTLRSQGIKIGCSTICGECAQEISWEDLRSRDRNVAT. 1499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g06521 1498 Coils Coil 1376 1396 - -
Seca7g06521 1498 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 748 931 IPR014001 -
Seca7g06521 1498 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 986 1325 IPR027417 -
Seca7g06521 1498 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1134 1305 IPR001650 -
Seca7g06521 1498 PANTHER RAD54-LIKE 16 1494 IPR044574 GO:0016887
Seca7g06521 1498 SMART helicmild6 1160 1257 IPR001650 -
Seca7g06521 1498 SMART ultradead3 722 943 IPR014001 -
Seca7g06521 1498 Coils Coil 107 134 - -
Seca7g06521 1498 MobiDBLite consensus disorder prediction 1 41 - -
Seca7g06521 1498 Gene3D - 991 1337 IPR027417 -
Seca7g06521 1498 CDD ADDz_ATRX 481 579 - -
Seca7g06521 1498 CDD SF2_C_SNF 1125 1268 - -
Seca7g06521 1498 Pfam SNF2-related domain 748 1050 IPR000330 GO:0005524|GO:0140658
Seca7g06521 1498 ProSiteProfiles ADD domain profile. 473 605 IPR025766 -
Seca7g06521 1498 MobiDBLite consensus disorder prediction 1424 1443 - -
Seca7g06521 1498 Coils Coil 49 76 - -
Seca7g06521 1498 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 712 980 IPR027417 -
Seca7g06521 1498 Gene3D - 697 980 IPR038718 -
Seca7g06521 1498 Pfam Helicase conserved C-terminal domain 1133 1257 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g06521 Seca-Chr7 166857015 166890597 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g06521 756 1310 RAD5 or RAD16-like Gene Family AT5G43530 24.843 6.53e-31 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Seca7g06521 SNF2_N 1.2e-52 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g06521 K10779 - gmx:100794911 2358.18