Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g06515 ATGGAGGAGAAATACAAGACTGTTGAGCCCCAGCTATCGATGGTTAAGTTATTAGATGACTTATGTGGAAGTTTTTTGAAGATGGGCTTGAATTTAAATCGAAAGGGATCAAATGCCAAGTATACCAATTCGCGAAAGGGCAAGCTATTTGTCGATGACATAACAAAAGGTTCAGAAAATGTTAAAATATCATTATTAGGTGAAACTGGAAGTGAGAACTTGCCAAAGTTTAATTACATACCATATAATATAATATATCAAAGTGCAAATGTAAATATTTCACTTGCTCGGATTGCGGATGAGGGTTGCTGTTCTGATTGTTCTGGAGACTGTCTTTCCTTATCATTTCCTTGTGCATGTTCTCAAGAAACTGGTGGAGAGTTTGCTTACACTCCACAAGGTTTGTTAACAAAAGAATTTTTAACAGCTTGCATGTCTATGAAAATGGAACCTCAAGATCATCATTTTGTGTATTGTCTTGAATGTCCATTGGAGAGGCCTAAGAATGAGAGCAAGGCTGAACCATGCAAGGGGCATCTGGTTCGGAAGTTTATAAAGGAATGCTGGAGGAAATGTGGATGTGACATTCAGTGTGGAAATCGGGTAGTGCAAAGAGGTTTAAGATGTCAATTGCAGGTGTTCTTGACTCGAGAAGGAAAGGGTTGGGGTGTTAGAACACTAGAAGATTTGCCCAAGGGATGCTTTGTATGTGAATATATTGGGGAAATATTAACTAATACAGAATTATATGAAAGGACTGTCCAGAATTGCGGCAATGACAGACATACATATCCTGTAACCCTTGATGCAGACTGGGGCTCAGAAGGGGTGTTAAAGGATGAGGAGGCACTATGCTTGGATGCAACATATAATGGGAATGTTGCAAGGTTTATCAATCATAGATGCTCTGATGCAAATCTAATAGACATTCCTGTTGAAGTGGAGACACCTGATCGCCACTATCATCATCTTGCTCTCTTTACAAGCAGAAAAGTGAATGCATACGAGGAGTTGACATGGGATTATGGCATTGACTTTGATGATCTTGACCATCCTATTAAAGCATTTCAATGTCGTTGTGGAAGTGCCTTCTGCCGTAATAAGAAACAAAAAGGAACTAGATCATTGAAGAATAAAAAAGTCAGGGATACAAATGCACACAAATAG 1167 0.389 MEEKYKTVEPQLSMVKLLDDLCGSFLKMGLNLNRKGSNAKYTNSRKGKLFVDDITKGSENVKISLLGETGSENLPKFNYIPYNIIYQSANVNISLARIADEGCCSDCSGDCLSLSFPCACSQETGGEFAYTPQGLLTKEFLTACMSMKMEPQDHHFVYCLECPLERPKNESKAEPCKGHLVRKFIKECWRKCGCDIQCGNRVVQRGLRCQLQVFLTREGKGWGVRTLEDLPKGCFVCEYIGEILTNTELYERTVQNCGNDRHTYPVTLDADWGSEGVLKDEEALCLDATYNGNVARFINHRCSDANLIDIPVEVETPDRHYHHLALFTSRKVNAYEELTWDYGIDFDDLDHPIKAFQCRCGSAFCRNKKQKGTRSLKNKKVRDTNAHK. 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g06515 388 SUPERFAMILY SET domain 61 366 IPR046341 -
Seca7g06515 388 FunFam SET-domain containing protein lysine methyltransferase family protein 54 368 - -
Seca7g06515 388 CDD SET_SETDB-like 75 343 - -
Seca7g06515 388 Gene3D SET domain 30 351 IPR046341 -
Seca7g06515 388 SMART preset_2 51 193 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Seca7g06515 388 Pfam SET domain 221 343 IPR001214 GO:0005515
Seca7g06515 388 Pfam Pre-SET motif 54 201 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Seca7g06515 388 ProSiteProfiles Pre-SET domain profile. 103 206 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Seca7g06515 388 PANTHER INACTIVE HISTONE-LYSINE N-METHYLTRANSFERASE SUVR1-RELATED 37 375 - -
Seca7g06515 388 ProSiteProfiles SET domain profile. 209 343 IPR001214 GO:0005515
Seca7g06515 388 SMART set_7 209 349 IPR001214 GO:0005515
Seca7g06515 388 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 1 381 IPR025776 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g06515 Seca-Chr7 166801374 166804103 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g06515 185 366 C2H2 Transcription Factor Family AT2G23740 41.489 8.67e-33 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Seca7g06515 Pre-SET 4e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g06515 - - gmx:100819479 670.618